Job Description O13329 Confidence 100.00% Date Mon Jul 2 19:10:05 BST 2012 Rank 1 Aligned Residues 183 % Identity 13% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	Y	D	M	V	M	A	T	H	L	M	N	K	H	L	R	G	K	T	L	H	S	F	L	F	S	H	F	A	N	I	S	H	A	I	I	D	W	V	Q	Q	F	C	S	K	C	N	K	K	G	K	I	K	P	L	K	E	Y	K	R	P	D	M	Y	D	K	L	L	P	M	E	R	I	H	I	E	V	F	E
Query Conservation
Alig confidence															.												.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.												.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	I	E	P	A	Q	E	E	H	E	K	Y	.	H	S	N	V	K	E	L	S	H	K	F	.	.	.	.	.	G	I	P	N	L	V	A	R	Q	I	V	N	S	C	A	Q	C	V	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	G	T	W	Q	M	D	C	T	H
Template Known Secondary structure		G	G												.												.	.	.	.	.													T	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure															.												.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																				.	.	.	50	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	N	G	E	A	I	E	G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R
Query Conservation
Alig confidence			.	.	.	.	.	.	.			.																																									.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.			.																																									.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	E	G	.	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	.	.	.	.	.	.	.	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M	V	A	W	W
Template Known Secondary structure			.	.	.	.	.	.	.	T	T	.									T	T	T	T								S	S															T	T	S			.	.	.	.	.	.	.									T	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.			.																																									.	.	.	.	.	.	.
Template SS confidence
		68								.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		310	.	.	.	.	.			.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure								.	.										.																			.	.	.																					.
Query SS confidence								.	.										.																			.	.	.																					.
Query Sequence		I	G	L	G	L	K	.	.	S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	A	D	.	.	.	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	.	K	R	K	P	V	Q	V	L	L	S
Query Conservation								.	.										.																			.	.	.																					.
Alig confidence								.	.										.																			.	.	.																					.
Template Conservation
Template Sequence		I	G	I	E	Q	S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	I	E	T	I	V	L	M	A	V	H	C	M	N	F	K	R	R	G	G	I	G	D	M	T	P	S	E	R	L	I	N
Template Known Secondary structure			T						S	S		S	S	S	T	T	T	T																	G	G	G		S																T			B	T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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