Job Description O13329 Confidence 99.98% Date Mon Jul 2 19:10:05 BST 2012 Rank 2 Aligned Residues 175 % Identity 13% Template c1k6yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase Resolution 2.40 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	M	V	M	A	T	H	L	M	N	K	H	L	R	G	K	T	L	H	S	F	L	F	S	H	F	A	N	I	S	H	A	I	I	D	W	V	Q	Q	F	C	S	K	C	N	K	K	G	K	I	K	P	L	K	E	Y	K	R	P	D	M	Y	D	K	L	L	P	M	E	R	I	H	I	E	V	F	E	P	F
Query Conservation
Alig confidence													.												.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation													.												.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		I	D	K	A	Q	E	E	H	E	K	Y	.	H	S	N	W	R	A	M	A	S	D	F	.	.	.	.	.	N	L	P	P	V	V	A	K	E	I	V	A	S	C	D	K	C	Q	L	K	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	G	I	W	Q	L	D	C	T	H	L	.
Template Known Secondary structure													.												.	.	.	.	.	T														T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T										.
Template Predicted Secondary structure													.												.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																			.	.	50	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	A	I	E	G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	.	L	A	G	R	W	P	V	K	.	.	.	.	.	.	T	V	H	T	D	N	G	S	N	F	T	S	T	T	V	K	A	A	C	D	W	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	T	T									T	T	T	T								S	S	S												.					S				.	.	.	.	.	.												S										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																				.									.	.	.	.	.	.
Template SS confidence
									69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure															.																	.	.	.																							.
Query SS confidence															.																	.	.	.																							.
Query Sequence		L	G	L	K	S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	.	.	.	A	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	.	K	R	K	P	V	Q	V	L	L	S
Query Conservation															.																	.	.	.																							.
Alig confidence			.	.	.	.	.	.	.						.																	.	.	.																							.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	K	Q	E	D	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	R	K	G	G	I	G	G	Y	S	A	G	E	R	I	V	D
Template Known Secondary structure			.	.	.	.	.	.	.																						G	G	G		S	S															S				T	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		135								.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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