Job Description O13329 Confidence 99.94% Date Mon Jul 2 19:10:05 BST 2012 Rank 9 Aligned Residues 129 % Identity 9% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G	L	G	L	K	S	S
Query Conservation
Alig confidence				.																																									.	.	.	.	.	.	.																												.
Template Conservation				.																																									.	.	.	.	.	.	.																												.
Template Sequence		E	G	.	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	V	.	.	.	.	.	.	.	K	T	I	H	T	D	N	G	S	N	F	T	G	A	T	V	R	A	A	C	D	W	A	G	I	K	Q	.	E	D
Template Known Secondary structure		T	T	.									T	T	T									S	S	S	S	T	T													S			.	.	.	.	.	.	.																					T	T	T	T				.
Template Predicted Secondary structure				.																																									.	.	.	.	.	.	.																												.
Template SS confidence
		69	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.
		318	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure									.																	.	.	.																							.
Query SS confidence									.																	.	.	.																							.
Query Sequence		A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	.	.	.	A	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	.	K	R	K	P	V	Q	V	L	L	S	E	V	P
Query Conservation									.																	.	.	.																							.
Alig confidence									.																	.	.	.																							.
Template Conservation
Template Sequence		G	I	P	Q	S	Q	G	V	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	R	K	G	G	I	G	G	Y	S	A	G	E	R	I	V	D	I	I	A
Template Known Secondary structure						S	S																		G	G	G		S	S	S																S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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