Job Description O13329 Confidence 99.97% Date Mon Jul 2 19:10:05 BST 2012 Rank 4 Aligned Residues 200 % Identity 11% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	K	L	L	P	M	E	R	I	H	I	E	V	F	E	P	F	N	G	E	A	I	E	G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D
Query Conservation
Alig confidence																		.	.	.							.																																												.	.	.	.	.	.
Template Conservation																		.	.	.							.																																												.	.	.	.	.	.
Template Sequence		P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	.	.	.	E	P	R	M	A	P	.	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	.	.	.	.	.	.	A	I	K	T	D
Template Known Secondary structure		S			S	S	T	T	S									.	.	.		G	G	G		S	.	S									T	T	T									S	S																					S	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.							.																																												.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.												.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.										.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.										.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G	L	G	L	K	.	.	S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	A	.	.	.	.	.	.	.	.	.	.	.	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N
Query Conservation																								.	.										.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.										.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H	K	E	R
Template Known Secondary structure		S						S											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														S	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	K	R	K	P	V	Q	V	L	L	S	E	V	P	G	H	N	A	K	F	E	T	K	R	E	R	V	I	E	N	T	Y	S	R	N	M	F	K	M	A	G	G	K	G	L	I	Y	L	E	D	V	N	T	F	A	L	A	N	E	A	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	N	T	K	T	P	I	Q	K	H	W	R	P	T	V	L	T	E	G	P	P	V	K	I	R	I	E	T	G	E	W	E	K	G	W	N	V	L	V	W	G	R	G	Y	A	A	V	K	N	R	D	T	D	K	V	I	W	V	P	S	R	K	V
Template Known Secondary structure		S	S		S	S								S					S	S									T	T	S													S	S							T	T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions