Job Description D6W196 Confidence 96.85% Date Mon Jul 2 19:10:02 BST 2012 Rank 223 Aligned Residues 70 % Identity 9% Template c4dckA_ PDB info PDB header:transport protein/signaling protein Chain: A: PDB Molecule:sodium channel protein type 5 subunit alpha; PDBTitle: crystal structure of the c-terminus of voltage-gated sodium channel in2 complex with fgf13 and cam Resolution 2.20 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		D	K	Q	R	D	I	R	Y	A	C	L	F	K	E	L	D	V	K	G	N	G	Q	V	T	L	D	N	L	I	S	A	F	E	K	N	D	H	P	L	K	G	N	D	E	A	I	K	M	L	F	T	.	A	M	D	V	N	K	D	S	V	V	D	L	S	D	F	K	K	Y	A
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		S	E	D	D	F	D	M	F	Y	E	I	W	E	K	F	D	P	E	A	T	Q	F	I	E	Y	S	V	L	S	D	F	A	D	A	L	S	E	P	L	R	I	A	K	P	N	Q	I	S	L	I	N	M	D	L	P	M	V	S	G	D	R	I	H	C	M	D	I	L	F	A	F
Template Known Secondary structure																		T	T			S				G	G	G								S		T	T	T				S	S								S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		1787	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions