Job Description D6W196 Confidence 99.84% Date Mon Jul 2 19:10:02 BST 2012 Rank 4 Aligned Residues 168 % Identity 13% Template c3sibA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	D	K	Q	R	D	I	R	Y	A	C	L	F	K	E	L	D	V	K	G	N	G	Q	V	T	L	D	N	L	I	S	A	F	E	K	N	D	H	P	L	K	G	N	D	E	A	I	K	M	L	F	T	A	M	D	V	N	K	D	S	V	V	D	L	S	D	F	K	K	Y	A	S	N	A	E	S	Q	I	W
Query Conservation
Alig confidence																																												.	.																																		.
Template Conservation																																												.	.																																		.
Template Sequence		T	I	P	L	D	Q	Y	T	R	I	Y	Q	W	F	M	G	V	D	R	D	R	S	G	T	L	E	I	N	E	L	M	M	G	Q	F	P	G	G	I	R	L	S	.	.	P	Q	T	A	L	R	M	M	R	I	F	D	T	D	F	N	G	H	I	S	F	Y	E	F	M	A	M	Y	K	F	M	E	L	.	A	Y
Template Known Secondary structure		G																		T	T			S	S	B											G	G	G					.	.													T	T		S	S		B															.
Template Predicted Secondary structure																																												.	.																																		.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		N	G	F	Q	R	I	D	L	D	H	D	G	K	I	G	I	N	E	I	N	R	Y	L	S	D	L	D	N	Q	S	I	C	N	N	E	L	N	H	E	L	S	.	.	.	.	N	E	K	V	N	K	F	S	R	F	F	E	W	A	F	P	K	R	K	A	N	I	A	L	R	G	Q	A	S	H	K	K	N	T	D
Query Conservation																																											.	.	.	.
Alig confidence																												.															.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																												.																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	F	V	M	N	D	R	N	R	S	G	T	L	E	P	H	E	I	L	P	A	L	Q	Q	L	.	G	F	Y	I	N	Q	R	T	S	L	L	L	H	R	L	F	A	R	G	M	A	F	C	D	L	N	C	W	I	A	I	C	A	F	A	A	Q	T	R	S	A	Y	.	.	.	.	.	.	.	.	.	.	Q
Template Known Secondary structure									T	T			S				G	G	G									.	T																S	T	T		S	S																					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.											.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	R	S	K	K	T	T	D	S	D	L	Y	V	T	Y	D	Q	W	R	D	F	L	L	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	F	M	N	P	Y	Y	G	P	M	K	P	F	N	P	M	E	F	G	K	F	L	D	V	V
Template Known Secondary structure					T	S	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions