Job Description D6W196 Confidence 90.43% Date Mon Jul 2 19:10:02 BST 2012 Rank 239 Aligned Residues 74 % Identity 8% Template c2kavA_ PDB info PDB header:transport protein regulator Chain: A: PDB Molecule:sodium channel protein type 2 subunit alpha; PDBTitle: solution structure of the human voltage-gated sodium channel, brain2 isoform (nav1.2) Resolution UNK

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		T	D	K	Q	R	D	I	R	Y	A	C	L	F	K	E	L	D	V	K	G	N	G	Q	V	T	L	D	N	L	I	S	A	F	E	K	N	D	H	P	L	K	G	N	.	D	E	A	I	K	M	L	F	T	A	M	D	V	N	K	D	S	V	V	D	L	S	D	F	K	K	Y	A	S	N	A
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		L	S	E	D	D	F	E	M	F	Y	E	V	W	E	K	F	D	P	D	A	T	Q	F	I	E	F	A	K	L	S	D	F	A	D	A	L	D	P	P	L	L	I	A	K	P	N	K	V	Q	L	I	A	M	D	L	P	M	V	S	G	D	R	I	H	C	L	D	I	L	F	A	F	T	K	R
Template Known Secondary structure		S																	T	T							G	G	G								S		T	T	S				T	T								T						T	T	T
Template Predicted Secondary structure
Template SS confidence
		1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions