Job Description D6W196 Confidence 99.58% Date Mon Jul 2 19:10:02 BST 2012 Rank 43 Aligned Residues 148 % Identity 17% Template c1s1eA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:kv channel interacting protein 1; PDBTitle: crystal structure of kv channel-interacting protein 12 (kchip-1) Resolution 2.30 Å

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		13	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.
Predicted Secondary structure													.																																																										.	.	.	.	.
Query SS confidence													.																																																										.	.	.	.	.
Query Sequence		D	I	R	Y	A	C	L	F	K	E	L	.	D	V	K	G	N	G	Q	V	T	L	D	N	L	I	S	A	F	E	K	N	D	H	P	L	K	G	N	D	E	A	I	K	M	L	F	T	A	M	D	V	N	K	D	S	V	V	D	L	S	D	F	K	K	Y	A	S	N	.	.	.	.	.	A	E	S	Q	I	W
Query Conservation													.																																																										.	.	.	.	.
Alig confidence													.																								.																																		.	.	.	.	.
Template Conservation																																					.
Template Sequence		K	R	E	L	Q	V	L	Y	R	G	F	K	N	E	C	P	S	G	V	V	N	E	E	T	F	K	Q	I	Y	A	Q	F	F	P	H	.	G	D	A	S	T	Y	A	H	Y	L	F	N	A	F	D	T	T	Q	T	G	S	V	K	F	E	D	F	V	T	A	L	S	I	L	L	R	G	T	V	H	E	K	L	R
Template Known Secondary structure																	T	T	S		B											T	T		T	T	.	S															T	T		S	S		B
Template Predicted Secondary structure																																					.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	F	Q	R	I	D	L	D	H	D	G	K	I	G	I	N	E	I	N	R	Y	L	S	D	L	D	N	Q	S	I	C	N	N	E	L	N	H	E	L	S	N	E	K	V	N	K	F	S	R	F	F	E	W	A	F	P	K	R	K	A	N	I	A	L	R	G	Q	A	S	H	K	K	N	T	D	N	D	R	S
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	T	F	N	L	Y	D	I	N	K	D	G	Y	I	N	K	E	E	M	M	D	I	V	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	M	M	G	K	Y	T	Y	P	V	L	K	E	D	T	P	R	Q	H	V	D	V	F	F	Q
Template Known Secondary structure									T	T			S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T				G	G	G		S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																													.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	T	T	D	S	D	L	Y	V	T	Y	D	Q	W	R	D	F	L	L	L	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	M	D	K	N	K	D	G	I	V	T	L	D	E	F	L	E	S	C	Q	E	D	D
Template Known Secondary structure					T	T		S	S													T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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