Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 4 Aligned Residues 726 % Identity 35% Template c2otgA_ PDB info PDB header:contractile protein Chain: A: PDB Molecule:myosin heavy chain; PDBTitle: rigor-like structures of muscle myosins reveal key2 mechanical elements in the transduction pathways of this3 allosteric motor Resolution 3.12 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.													.
Query SS confidence																.													.
Query Sequence		I	L	K	R	G	A	R	K	K	V	H	Q	E	P	.	A	K	R	S	A	N	I	K	K	A	T	F	.	D	S	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R
Query Conservation																.													.
Alig confidence																.													.
Template Conservation
Template Sequence		I	Q	S	S	K	G	E	E	I	T	V	K	I	V	S	D	N	S	T	R	T	V	K	K	D	D	I	Q	Q	M	N	P	P	K	F	E	K	L	E	D	M	A	N	M	T	Y	L	N	E	A	S	V	L	N	N	L	R	G	R	Y	T	A	G	L	I	Y	T	Y	S	G	L	F	C	I	A	V	N	P	Y	R
Template Known Secondary structure							S	S							T	T	T								T	T	T							G	G	G	T	T		S	B	T	T	S		S	S		S													T	T	T							T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	G	I	Y	T	D	A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G	K	I
Query Conservation
Alig confidence																																																																													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		R	L	P	I	Y	T	D	S	V	I	A	K	Y	R	G	K	R	K	T	E	I	P	P	H	L	F	S	V	A	D	N	A	Y	Q	N	M	V	T	D	R	E	N	Q	S	C	L	I	T	G	E	S	G	A	G	K	T	E	S	T	K	K	V	I	M	Y	F	A	R	V	A	A	N	L	S	N	.	.	.	.	L
Template Known Secondary structure				G	G	G									T	T			G	G	G	S																			T										S	T	T	S	S														T	T	S						.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	Q	I	I	E	A	N	P	V	L	E	A	F	G	N	A	K	T	V	R	N	N	N	S	S	R	F	G	K	F	I	R	I	H	F	G	P	T	G	K	I	A	G	A	D	I	E	T	Y	L	L	E	K	S	R	V	T	Y	Q	Q	S	A	E	R	N	Y	H	I	F	Y	Q	I	C	S	N	A	I	P	E
Template Known Secondary structure																					S	S		T	T				S										T	T	S															G	G	G	T				T	T			S	B							T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		241	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.
Predicted Secondary structure									.																																																																					.
Query SS confidence									.																																																																					.
Query Sequence		Y	R	Q	T	F	G	V	.	Q	K	P	E	Q	Y	V	Y	T	A	A	A	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	E	G	N	.	A	Q	V
Query Conservation									.																																																																					.
Alig confidence									.													.																																																								.
Template Conservation																						.
Template Sequence		L	N	E	V	M	L	I	T	P	D	S	G	L	Y	S	F	I	N	Q	G	.	C	L	T	V	D	N	I	D	D	V	E	E	F	K	L	C	D	E	A	F	D	I	L	G	F	T	K	E	E	K	T	S	M	F	K	C	T	A	S	I	L	H	M	G	E	M	K	F	K	Q	R	P	R	E	E	Q	A	E	S
Template Known Secondary structure							T			S		G	G	G		T	T	T	S	S	S	.					T	T																		T																				T	T							S	S	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F
Query Conservation
Alig confidence																																		.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		D	G	T	A	E	A	E	K	V	A	F	L	C	G	I	N	A	G	D	L	L	K	A	L	L	K	P	K	V	K	V	G	.	.	.	.	.	T	E	M	V	T	K	G	Q	N	L	Q	Q	V	I	N	S	V	G	A	L	S	K	S	L	Y	D	R	M	F	N	W	L	V	K	R	V	N	R	T	L	D	T	K
Template Known Secondary structure		S		S											T	S											S						T	.	.	.	.	.	T	S								S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.						.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		P	G	A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E	K	I	Q	W	T	P	I	K	Y	F	.	D	N	K	V	V	C	D	L	I	E	A	R	R	P	P
Query Conservation																																																																		.
Alig confidence																																																																		.												.	.
Template Conservation																																																																														.	.
Template Sequence		A	K	R	N	Y	Y	I	G	V	L	D	I	A	G	F	E	I	F	D	F	N	S	F	E	Q	L	C	I	N	Y	T	N	E	R	L	Q	Q	F	F	N	H	H	M	F	V	L	E	Q	E	E	Y	K	K	E	G	I	Q	W	E	F	I	D	F	G	M	D	L	Q	M	C	I	D	L	I	E	K	.	.	P	M
Template Known Secondary structure																				S	S																																		T	S								S	S	S											S	.	.	T	T
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.											.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																																.								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.								.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	.	F	T	T	N	P	H	F	.	.	.	.	.	.	.	.	.	.	D	L	R	S	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q
Query Conservation																																.								.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.															.								.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		G	I	L	S	I	L	E	E	E	C	M	F	.	.	.	.	P	K	A	D	D	K	S	F	Q	D	Y	S	Y	Q	N	H	I	G	K	N	R	M	F	T	K	P	G	K	P	T	R	P	N	Q	G	H	A	H	F	E	L	H	H	Y	A	G	N	V	P	Y	S	I	A	G	W	L	D	K	N	K	D	P	I	N
Template Known Secondary structure		S										S		.	.	.	.	T	T													T	T	T	T	T		S	S						S		S	S	T	T					S						T	T								T	T						S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.					540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	L	V	E	L	I	G	T	T	T	N	T	F	L	A	T	I	F	P	D	T	V	D	R	E	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A	Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L	H	Q	I
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		E	N	V	V	S	L	L	A	V	S	K	E	P	L	V	A	E	L	F	.	.	.	.	.	.	.	.	R	A	P	D	Q	T	I	S	A	V	H	R	E	S	L	N	K	L	M	C	N	L	R	R	T	N	P	H	F	V	R	C	I	I	P	N	L	E	K	D	P	G	L	V	D	A	E	L	V	L	H	Q	L
Template Known Secondary structure										T		S	S							T	.	.	.	.	.	.	.	.																							T	T	S	B											S	S			T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.									.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	L	G	L	Q	E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V	K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T	P	E	T
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.																																			.
Template Conservation																																						.	.	.	.	.	.	.																																			.
Template Sequence		Q	C	N	G	V	L	E	G	I	R	I	C	R	K	G	F	P	S	R	L	I	Y	S	E	F	K	Q	R	Y	S	I	L	A	P	N	A	.	.	.	.	.	.	.	I	P	Q	D	G	K	T	V	S	E	K	I	L	T	G	L	Q	M	D	P	S	E	Y	R	L	G	T	T	K	V	F	F	K	A	.	G	V
Template Known Secondary structure					S	T	T								T	S															G	G	G	S	G	G	G	.	.	.	.	.	.	.																T	T			T	T	T					S	S						T	.	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.																																			.
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.								.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.		.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.									.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.
Query Sequence		L	F	A	L	E	H	M	R	D	R	Y	W	H	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	I	D	.	.	.	.	.	.	.	.	A	A	T	K	I	Q	R	T	I	R	E	R	K	E	G	N	K	Y	E	K	L	R
Query Conservation																																		.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	N	L	E	E	M	R	D	E	R	L	S	K	I	I	S	M	F	Q	A	H	I	R	G	Y	L	I	R	K	A	Y	K	K	L	Q	D	Q	R	I	G	L	S	V	I	Q	R	N	I	R	K	W	L	V	L	R	N	W	Q	W	W	K
Template Known Secondary structure																																																									T	T
Template Predicted Secondary structure
Template SS confidence
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.