Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 5 Aligned Residues 723 % Identity 34% Template c2bkhA_ PDB info PDB header:motor protein/metal-binding protein Chain: A: PDB Molecule:unconventional myosin; PDBTitle: myosin vi nucleotide-free (mdinsert2) crystal structure Resolution 2.4 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		I	L	K	R	G	A	R	K	K	V	H	Q	E	P	A	K	R	.	.	.	S	A	N	I	K	K	A	T	F	D	S	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F
Query Conservation																			.	.	.
Alig confidence																			.	.	.
Template Conservation
Template Sequence		I	V	D	I	G	P	D	S	L	T	I	E	P	L	N	Q	K	G	K	T	F	L	A	L	I	N	Q	V	F	P	A	E	E	D	S	K	K	D	V	E	D	N	C	S	L	M	Y	L	N	E	A	T	L	L	H	N	I	K	V	R	Y	S	K	D	R	I	Y	T	Y	V	A	N	I	L	I	A	V	N	P	Y
Template Known Secondary structure							S	S							T	T	T	S	S							G	G	G						S		T	T				S	B	G	G	G	S	S	S		S														T	T							T	T								S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	D	L	G	.	I	Y	T	D	A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G
Query Conservation						.
Alig confidence						.																																																																									.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		F	D	I	P	K	I	Y	S	S	E	T	I	K	S	Y	Q	G	K	S	L	G	T	M	P	P	H	V	F	A	I	A	D	K	A	F	R	D	M	K	V	L	K	L	S	Q	S	I	I	V	S	G	E	S	G	A	G	K	T	E	N	T	K	F	V	L	R	Y	L	T	E	S	Y	G	T	G	Q	D	.	.	.
Template Known Secondary structure		S			S	S	T	T	S								T	T			T	T	S	S																			T											T	T	S	S																			S			.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	D	D	R	I	V	E	A	N	P	L	L	E	A	F	G	N	A	K	T	V	R	N	N	N	S	S	R	F	G	K	F	V	E	I	H	F	N	E	K	S	S	V	V	G	G	F	V	S	H	Y	L	L	E	K	S	R	I	C	V	Q	G	K	E	E	R	N	Y	H	I	F	Y	R	L	C	A	G	A	S
Template Known Secondary structure		.																					S	S		T	T				S										T	T	S															G	G	G	T				T	T			S	B										S
Template Predicted Secondary structure		.
Template SS confidence
			178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	Y	R	Q	T	F	G	V	Q	K	P	E	Q	Y	V	Y	T	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	I	R	E	R	L	H	L	S	S	P	D	N	F	R	Y	L	N	R	G	C	T	R	Y	F	A	N	K	E	T	D	K	Q	I	L	Q	N	R	K	S	P	E	Y	L	K	A	G	S	L	K	D	P	L	L	D	D	H	G	D	F	I	R	M	C	T	A	M	K	K	I	G	L	D	D	E	E	K	L	D
Template Known Secondary structure								T	T				G	G	G						T	S					B									S		G	G	G											B			S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	E	G	N	A	Q	V	R	D	T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		L	F	R	V	V	A	G	V	L	H	L	G	N	I	D	F	E	E	A	G	.	C	N	L	K	N	K	S	T	Q	A	L	E	Y	C	A	E	L	L	G	L	D	Q	D	D	L	R	V	S	L	T	T	R	V	M	L	T	T	A	G	G	A	K	G	T	V	I	K	V	P	L	K	V	E	Q	A	N	N	A	R
Template Known Secondary structure													T	T								.					G	G	G											T	T																	S		S	S	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F	P	G	A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		D	A	L	A	K	T	V	Y	S	H	L	F	D	H	V	V	N	R	V	N	Q	C	F	P	F	E	T	.	S	S	Y	F	I	G	V	L	D	I	A	G	F	E	Y	F	E	H	N	S	F	E	Q	F	C	I	N	Y	C	N	E	K	L	Q	Q	F	F	N	E	R	I	L	K	E	E	Q	E	L	Y	Q	K	E
Template Known Secondary structure																						T	T	S			S		.		S															S	S																																		T
Template Predicted Secondary structure																													.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	Q	W	T	P	I	K	Y	F	D	N	K	V	V	C	D	L	I	E	A	R	R	P	P	G	I	F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	.	F	T	T	N	P	H	F	D	L	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.															.	.	.	.															.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.															.	.	.	.
Template Sequence		G	L	G	V	N	E	V	H	Y	V	D	N	Q	D	C	I	D	L	I	E	A	R	.	L	V	G	I	L	D	I	L	D	E	E	N	R	L	.	.	.	.	P	Q	P	S	D	Q	H	F	T	S	A	V	H	Q	K	H	K	D	H	F	R	L	S	I	P	R	K	S	K	L	A	I	H	R	N	I	R	D	D
Template Known Secondary structure		T																					T	.	T	T	S										T	S	.	.	.	.	S	S														T	T	T		T	T				G	G	G		S	S	S	T	T	T	T			T	T
Template Predicted Secondary structure																								.															.	.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.					.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	V	E	L	I	G	T	T	T	N	T	F	L	A	T	I	F	P	D	T	V	D	R	E	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	F	I	I	R	H	F	A	G	A	V	C	Y	E	T	T	Q	F	V	E	K	N	N	D	A	L	H	M	S	L	E	S	L	I	C	E	S	R	D	K	F	I	R	E	L	F	.	.	.	.	.	.	.	.	.	.	E	F	I	S	V	G	N	K	F	K	T	Q	L	N	L	L	L	D	K	L	R	S	T
Template Known Secondary structure		S							T	T								T	T					T														T		S	S							T	.	.	.	.	.	.	.	.	.	.																						T	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.											.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L	H	Q	I	K	Y	L	G	L	Q	E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		G	A	S	F	I	R	C	I	K	P	N	L	K	M	T	S	H	H	F	E	G	A	Q	I	L	S	Q	L	Q	C	S	G	M	V	S	V	L	D	L	M	Q	G	G	F	P	S	R	A	S	F	H	E	L	Y	N	M	Y	K	K	Y	M	P	D	K	L	A	R	L	.	.	.	.	.	.	D	P	R	L	F	C
Template Known Secondary structure													T	T			S	S														T	T									T	T	S															G	G	G	S						T	S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.							730	.	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T	P	E	T	L	F	A	L	E	H	M	R	D	R	Y	W	H	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	I	D	A	A	T	K	I	Q	R	T	I	R	E	R	K	E	G	N
Query Conservation
Alig confidence																											.																								.
Template Conservation																											.																								.
Template Sequence		K	A	L	F	K	A	L	G	L	N	E	I	D	Y	K	F	G	L	T	K	V	F	F	R	P	.	G	K	F	A	E	F	D	Q	I	M	K	S	D	P	D	H	L	A	E	L	V	K	R	.	V	N	H	W	L	I	C	S	R	W	K	K	V	Q	W	C	S	L	S	V	I	K	L	K	N	K
Template Known Secondary structure									T			T	T	T					S	S						T	.	T											S											T	.	T
Template Predicted Secondary structure																											.																								.
Template SS confidence
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760		.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.		.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.