Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 16 Aligned Residues 682 % Identity 37% Template c1w8jD_ PDB info PDB header:motor protein Chain: D: PDB Molecule:myosin va; PDBTitle: crystal structure of myosin v motor domain -2 nucleotide-free Resolution 2.7 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.																															.
Query SS confidence																														.	.																															.
Query Sequence		I	L	K	R	G	A	R	K	K	V	H	Q	E	P	A	K	R	S	A	N	I	K	K	A	T	F	D	S	.	.	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	.	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F
Query Conservation																														.	.																															.
Alig confidence																														.	.																															.
Template Conservation
Template Sequence		D	Y	K	P	G	D	K	V	L	Q	L	R	L	D	L	E	Y	C	L	D	P	K	T	K	E	L	P	P	L	R	N	P	D	I	L	V	G	E	N	D	L	T	A	L	S	Y	L	H	E	P	A	V	L	H	N	L	K	V	R	F	I	D	S	K	L	I	Y	T	Y	C	G	I	V	L	V	A	I	N	P	Y
Template Known Secondary structure					T	T		S														T	T	T						B				G	G	G	T	T		S	B	G	G	G		S	S		S													T	T	T								T	T								S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	L	G	I	Y	T	D	A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G	K
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		E	Q	L	P	I	Y	G	E	D	I	I	N	A	Y	S	G	Q	N	M	G	D	M	D	P	H	I	F	A	V	A	E	E	A	Y	K	Q	M	A	R	D	E	R	N	Q	S	I	I	V	S	G	E	S	G	A	G	K	T	V	S	A	K	Y	A	M	R	Y	F	A	T	V	S	G	S	A	N	.	.	.	.	.
Template Known Secondary structure		S			S		S							T	T	T	T	S		B	T	T	B																		S												S	S	S	S	T	T													T	T					.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	E	K	V	L	A	S	N	P	I	M	E	S	I	G	N	A	K	T	T	R	N	D	N	S	S	R	F	G	K	Y	I	E	I	G	F	D	K	R	Y	R	I	I	G	A	N	M	R	T	Y	L	L	E	K	S	R	V	V	F	Q	A	E	E	E	R	N	Y	H	I	F	Y	Q	L	C	A	S	A	A	L
Template Known Secondary structure			S						S							T	T					T	T							S										T	T												S			T	G	G	G	T				T	T											T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	Y	R	Q	T	F	G	V	Q	K	P	E	Q	Y	V	Y	T	A	A	A	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	E	G	N	A	Q	.	V
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		P	E	F	K	T	L	R	L	G	N	A	N	Y	F	H	Y	T	K	Q	G	G	S	P	V	I	D	G	I	D	D	A	K	E	M	V	N	T	R	Q	A	C	T	L	L	G	I	S	D	S	Y	Q	M	G	I	F	R	I	L	A	G	I	L	H	L	G	N	V	E	F	A	S	R	D	S	D	S	C	A	I	P
Template Known Secondary structure		S	S	S	T	T	T					G	G	G	S	G	G	G		S	S						T	T	S															T	T	T			S																	T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F
Query Conservation
Alig confidence																																		.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		P	K	H	D	P	L	T	I	F	C	D	L	M	G	V	D	Y	E	E	M	A	H	W	L	C	H	R	K	L	A	T	A	.	.	.	.	.	T	E	T	Y	I	K	P	I	S	K	L	H	A	I	N	A	R	D	A	L	A	K	H	I	Y	A	N	L	F	N	W	I	V	D	H	V	N	K	A	L	H	S	T
Template Known Secondary structure		T	T												T			T	T						T	T							S	.	.	.	.	.	S																																										S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E	K	I	Q	W	T	P	I	K	Y	F	D	N	K	V	V	C	D	L	I	E	A	R	R	P	P	G
Query Conservation
Alig confidence																																																												.	.	.	.														.	.
Template Conservation																																																												.	.	.	.														.	.
Template Sequence		V	K	Q	H	S	F	I	G	V	L	D	I	Y	G	F	E	T	F	E	I	N	S	F	E	Q	F	C	I	N	Y	A	N	E	K	L	Q	Q	Q	F	N	M	H	V	F	K	L	E	Q	E	E	Y	M	K	E	Q	I	P	D	.	.	.	.	F	Y	D	N	Q	P	C	I	N	L	I	E	A	.	.	K	M	G
Template Known Secondary structure		S			S															S	S																																		T	T				.	.	.	.													S	.	.	T	T	S
Template Predicted Secondary structure																																																												.	.	.	.														.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.					.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.					.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure																															.								.	.	.	.
Query SS confidence																															.								.	.	.	.
Query Sequence		I	F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	.	F	T	T	N	P	H	F	.	.	.	.	D	L	R	S	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	V	E	L	I
Query Conservation																															.								.	.	.	.
Alig confidence													.	.	.	.															.								.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		V	L	D	L	L	D	E	E	C	K	M	.	.	.	.	P	K	G	S	D	D	T	W	A	Q	K	L	Y	N	T	H	L	N	K	C	A	L	F	E	K	P	R	L	S	N	K	A	F	I	I	K	H	F	A	D	K	V	E	Y	Q	C	E	G	F	L	E	K	N	K	D	T	V	Y	E	E	Q	I	K	V	L
Template Known Secondary structure												S	.	.	.	.	T	T															T	T	T	S	T	T					T	T		S	S							S	S								T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.					.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		554	.	.	.	.		.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	T	T	T	N	.	T	F	L	A	T	I	F	P	D	T	V	D	R	E	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A	Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L	H	Q	I	K	Y	L	G	L	Q
Query Conservation							.
Alig confidence							.									.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		K	S	S	K	K	F	K	L	L	P	E	L	F	T	.	.	.	.	.	.	S	K	E	H	K	K	T	V	G	H	Q	F	R	N	S	L	H	L	L	M	E	T	L	N	A	T	T	P	H	Y	V	R	C	I	K	P	N	D	F	K	F	P	F	T	F	D	E	K	R	A	V	Q	Q	L	R	A	C	G	V	L
Template Known Secondary structure		T	T			S	S	T					T			.	.	.	.	.	.																										S										S		T	T			S	S				S										T	T
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.							.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V	K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T	P	E	T	L	F	A	L	E	H
Query Conservation
Alig confidence																																				.	.	.	.	.	.																																.
Template Conservation																																				.	.	.	.	.	.																																.
Template Sequence		E	T	I	R	I	S	A	A	G	F	P	S	R	W	T	Y	Q	E	F	F	S	R	Y	R	V	L	M	K	Q	K	D	V	L	S	.	.	.	.	.	.	D	R	K	Q	T	C	K	N	V	L	E	K	L	I	L	D	K	D	K	Y	Q	F	G	K	T	K	I	F	F	R	A	.	G	Q	V	A	Y	L	E	K
Template Known Secondary structure									T	S															G	G	G	S		G	G	G			S	.	.	.	.	.	.														S			G	G	G					S	S						T	.	T
Template Predicted Secondary structure																																				.	.	.	.	.	.																																.
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.							.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.		.	.	.	.	.	.	760	.
		713	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	D	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	A	D	K
Template Known Secondary structure						.
Template Predicted Secondary structure
Template SS confidence
		762	.	.	.	.