Job Description Q04439 Confidence 89.51% Date Mon Jul 2 19:30:40 BST 2012 Rank 308 Aligned Residues 106 % Identity 14% Template c1ry6A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:internal kinesin; PDBTitle: crystal structure of internal kinesin motor domain Resolution 1.60 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140													.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	.	.	.	.	.	.	.	.	.	.	.	.	R	I	M	Q	Y	I	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	I	K	P	L	I	I	D	L	Y	E	N	G	C	V	C	S	C	F	A	Y	G	Q	T	G	S	G	K	T	Y	T	M	L	G	S	Q	P	Y	G	Q	S	D	T	P	G	I	F	Q	Y	A	A	G	D	I	F	T	F	L	N	I	Y	D	K	D	N	T	K	G	I	F	I	S	F	Y	E	I	Y	C	G
Template Known Secondary structure				T																						T	T	S	S							B	S	S	S	T	T	T	S	S		B																			S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	T	H	T	E	S	I	G	K	I	K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	.	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Template Conservation
Template Sequence		K	L	Y	D	L	L	Q	K	K	E	V	V	V	K	D	L	K	I	L	R	V	L	T	K	E	E	L	I	L	K	M	I	D	G	V	L	L	R	K	I	G	V	N	S	Q	N	D	E	S	S	R	S	H	A	I	L	N	I	D	L	K	D	I	N	K	N	T	S	L	G	K	I	A	F	I	D	L
Template Known Secondary structure						S						B		G	G	G	S							S																			T	T			T	T	G	G	G	G	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions