Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 20 Aligned Residues 705 % Identity 32% Template c1o1aP_ PDB info PDB header:contractile protein Chain: P: PDB Molecule:skeletal muscle myosin ii; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle Resolution 70.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	K	K	V	H	Q	E	P	A	K	R	S	A	N	I	K	K	A	T	F	D	S	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R	D	L	G	I	Y	T	D
Query Conservation
Alig confidence																														.																						.																							.
Template Conservation																														.																						.																							.
Template Sequence		S	E	G	G	V	T	V	T	E	G	G	E	T	L	T	V	K	E	D	Q	V	F	S	M	N	P	P	Y	.	D	I	E	D	M	A	M	M	T	H	L	H	E	P	A	V	L	Y	N	L	E	.	R	Y	A	A	W	M	I	Y	T	Y	S	G	L	F	C	V	T	V	N	P	Y	W	.	L	P	V	Y	N	P
Template Known Secondary structure							B				S	S				B			G	G	G									.				B	G	G	G		S													.		T	T	T	T							S	S										.		G	G	G
Template Predicted Secondary structure																														.																						.																							.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.								.	160
Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.
Query Sequence		A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G	.	.	.	.	.	.	.	K	I
Query Conservation																																																																									.	.	.	.	.	.	.
Alig confidence			.																																																																						.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		V	.	V	L	A	Y	R	G	K	K	R	Q	E	A	P	P	H	I	F	S	I	S	D	N	A	Y	Q	F	M	L	T	D	R	E	N	Q	S	I	L	I	T	G	E	S	G	A	G	K	T	V	N	T	R	V	I	Q	Y	F	A	T	I	A	A	S	G	E	K	K	K	E	E	Q	S	G	K	M	Q	G	T	L
Template Known Secondary structure			.	T	T	T	T	T	T			T	T	S	S		S																	T											T	T	S																T				S	S	T	T	S	S	S	S	T	T	S	T	T		T
Template Predicted Secondary structure			.
Template SS confidence
		139		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	A
Query Conservation
Alig confidence																			.												.																								.																							.
Template Conservation																			.												.																								.																							.
Template Sequence		E	D	Q	I	I	S	A	N	P	L	L	E	A	F	G	N	A	.	T	V	R	N	D	N	S	S	R	F	G	.	F	I	R	I	H	F	G	A	T	G	K	L	A	S	A	D	I	E	T	Y	L	L	E	.	S	R	V	T	F	Q	L	P	A	E	R	S	Y	H	I	F	Y	Q	I	M	S	N	.	P	E	L
Template Known Secondary structure		T	T														B		.			S		S	S		B				.								S	S	S	S						B							.		T	T	T				T	T											T	T		.
Template Predicted Secondary structure																			.												.																								.																							.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	Q	T	F	G	V	Q	K	P	E	Q	Y	V	Y	T	A	A	A	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	E	G	N	A	Q	V	R	D
Query Conservation
Alig confidence																							.																													.	.																				.	.
Template Conservation																							.																													.	.																				.	.
Template Sequence		I	D	M	L	L	I	T	T	N	P	Y	D	Y	H	Y	V	S	E	G	E	I	.	T	V	P	S	I	D	D	Q	E	E	L	M	A	T	D	S	A	I	D	I	L	G	F	S	A	D	E	T	.	.	A	I	Y	L	T	G	A	V	M	H	Y	G	N	L	K	F	Q	Q	R	.	.	E	E	Q	A	E	P	D
Template Known Secondary structure						T			S		G	G	G		G	G	G		S	S			.			T	T																	T	T			S				.	.					T	T						T	T							.	.	S						S
Template Predicted Secondary structure																							.																													.	.																				.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F	P	G
Query Conservation
Alig confidence																																.	.	.	.	.					.																		.	.
Template Conservation																																.	.	.	.	.					.																		.	.
Template Sequence		G	T	E	V	A	D	A	A	Y	L	M	G	L	N	S	A	E	L	L	K	A	L	C	Y	P	R	V	G	V	G	.	.	.	.	.	N	E	A	V	.	T	G	E	T	V	S	E	V	H	N	S	V	G	A	L	A	A	.	.	V	Y	E	M	F	L	W	M	V	I	R	I	N	Q	Q	L	D	T	K	Q	P
Template Known Secondary structure			S	S	S								T												S						S	.	.	.	.	.	S	S			.																		.	.																T			S	S
Template Predicted Secondary structure																																.	.	.	.	.					.																		.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.						.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E	K	I	Q	W	T	P	I	K	Y	F	.	D	N	K	V	V	C	D	L	I	E	A	R	R	P	P	G	I
Query Conservation																																																																.
Alig confidence																																	.																		.	.												.											.	.	.
Template Conservation																																	.																		.	.																							.	.	.
Template Sequence		R	Q	Y	F	I	G	V	L	D	I	A	G	F	E	I	F	D	F	N	S	F	E	Q	L	C	I	N	F	T	N	E	.	L	Q	Q	F	F	N	H	H	M	F	V	L	E	Q	E	E	Y	.	.	E	G	I	E	W	E	F	I	D	F	G	M	D	L	A	A	C	I	E	L	I	E	.	.	.	P	M	G	I
Template Known Secondary structure																		S	S	B													.																		.	.										S	T												.	.	.			S
Template Predicted Secondary structure																																	.																		.	.																							.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520								.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.
Query Sequence		F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	F	T	T	N	P	H	F	D	L	R	S	N	K	.	.	.	.	.	.	.	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	V	E	L
Query Conservation																																											.	.	.	.	.	.	.
Alig confidence												.	.	.	.																												.	.	.	.	.	.	.																					.	.
Template Conservation												.	.	.	.																																																							.	.
Template Sequence		F	S	I	L	E	E	E	C	M	F	.	.	.	.	P	K	A	T	D	T	S	F	N	L	Y	D	E	H	L	G	K	S	N	N	F	Q	K	P	K	P	A	K	G	K	A	E	A	H	F	S	L	V	H	Y	A	G	T	V	D	Y	N	I	S	G	W	L	E	N	.	.	D	P	L	N	E	T	V	I	G	L
Template Known Secondary structure									T	T		.	.	.	.	T	T			T	T	T								B	T	T	B	S	S								S	S					S						S	S								S	S					.	.
Template Predicted Secondary structure												.	.	.	.																																																							.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.					.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.										.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.
Query Sequence		I	G	T	T	T	N	T	F	L	A	T	I	F	.	.	.	.	.	.	.	.	.	P	D	T	V	D	R	E	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A	Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L
Query Conservation															.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																								.																					.
Template Conservation																																															.																					.
Template Sequence		Y	Q	S	S	V	T	L	A	L	L	F	A	T	Y	G	G	E	A	E	G	G	G	G	K	K	G	G	K	K	K	G	S	S	F	Q	T	V	S	A	L	F	R	E	N	L	.	N	L	M	A	N	L	R	S	T	H	P	H	F	V	R	C	I	I	P	N	.	E	T	T	P	G	A	M	E	H	E	L	V	L
Template Known Secondary structure																	T	T	G	G	G	G		S	S	S	S		G	G	G	G	T			S		S	S								.								T	S												.				T	T
Template Predicted Secondary structure																																															.																					.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.		.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.		.	.	.	.	680	.	.	.	.	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	I	K	Y	L	G	L	Q	E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V	K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T
Query Conservation
Alig confidence																																																.	.	.																															.
Template Conservation																																																.	.	.																															.
Template Sequence		H	Q	L	R	C	N	G	V	L	E	G	I	R	I	C	R	K	G	F	P	S	R	V	L	Y	A	D	F	K	Q	R	Y	R	V	L	N	A	S	A	I	P	E	G	Q	F	M	.	.	.	D	S	K	K	A	S	E	K	L	L	G	G	G	D	V	D	H	T	Q	Y	A	F	G	H	T	V	F	F	A	G	.
Template Known Secondary structure								S									T	T	S				B											G	G	G	S	T	T									.	.	.		T	T							T	T	S	S	S			S	S	S		B						B			T	.
Template Predicted Secondary structure																																																.	.	.																															.
Template SS confidence
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.				.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.									.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		P	E	T	L	F	A	L	E	H	M	R	D	R	Y	W	H	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	.	.	.	.	.	.	.	.	I	D	A	A	T	K	I	Q	R	T	I	R	E	R	K	E	G	N
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence		.	.												.																				.	.	.	.	.	.	.	.
Template Conservation		.	.												.
Template Sequence		.	.	L	L	G	L	L	E	E	M	R	D	D	.	L	A	E	I	I	T	A	T	Q	A	R	C	R	G	F	L	M	R	V	E	Y	R	A	M	V	E	R	R	E	S	I	F	C	I	Q	Y	N	V	R	S	F	M	N	V	H
Template Known Secondary structure		.	.												.		T	T	T	T
Template Predicted Secondary structure		.	.												.
Template SS confidence
				771	.	.	.	.	.	.	.	.	780	.		.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.