Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 9 Aligned Residues 777 % Identity 33% Template c1g8xB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		I	L	K	R	G	A	R	K	K	V	H	Q	E	P	A	K	R	S	A	N	I	K	K	A	T	F	.	D	S	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R	D
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		I	V	S	E	T	S	D	S	F	T	F	K	T	V	D	G	Q	D	R	Q	V	K	K	D	D	A	N	Q	R	N	P	I	K	F	D	G	V	E	D	M	S	E	L	S	Y	L	N	E	P	A	V	F	H	N	L	R	V	R	Y	N	Q	D	L	I	Y	T	Y	S	G	L	F	L	V	A	V	N	P	F	K	R
Template Known Secondary structure							S	S							S	S	S							T	T	T			B				G	G	G	T	T		S	B	G	G	G		S	S															T	T	T							T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		L	G	I	Y	T	D	A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G	K	.	I
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		I	P	I	Y	T	Q	E	M	V	D	I	F	K	G	R	R	R	N	E	V	A	P	H	I	F	A	I	S	D	V	A	Y	R	S	M	L	D	D	R	Q	N	Q	S	L	L	I	T	G	E	S	G	A	G	K	T	E	N	T	K	K	V	I	Q	Y	L	A	S	V	A	G	R	N	Q	A	N	G	S	G	V	L
Template Known Secondary structure			S			S							T	T	T			T	T	T	S																			T										S	T	T	S	S																	S		T	T		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	Q	I	L	Q	A	N	P	I	L	E	A	F	G	N	A	K	T	T	R	N	N	N	S	S	E	F	G	K	F	I	E	I	Q	F	N	N	A	G	F	I	S	G	A	S	I	Q	S	Y	L	L	E	K	S	R	V	V	F	Q	S	E	T	E	R	N	Y	H	I	F	Y	Q	L	L	A	G	A	T	A	E
Template Known Secondary structure																					S	S		T	T			S	S										T	T	S														G	G	G	G	T				T	T				B
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	Q	T	F	G	V	Q	K	P	E	Q	Y	V	Y	T	A	A	A	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	E	G	N	A	Q	V	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	K	A	L	H	L	A	G	P	E	S	F	N	Y	L	N	Q	S	G	C	V	D	I	K	G	V	S	D	E	D	E	F	K	I	T	R	Q	A	M	D	I	V	G	F	S	Q	E	E	Q	M	S	I	F	K	I	I	A	G	I	L	H	L	G	N	I	K	F	E	K	G	A	G	E	G	A	V	L	K	D
Template Known Secondary structure				T	T	T	T				G	G	G	S	T	T	T	S	S	S	S					T	T																		T																												S	S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F	P	G
Query Conservation
Alig confidence																																.	.	.	.	.																																												.
Template Conservation																																.	.	.	.	.																																												.
Template Sequence		K	T	A	L	N	A	A	S	T	V	F	G	V	N	P	S	V	L	E	K	A	L	M	E	P	R	I	L	A	G	.	.	.	.	.	R	D	L	V	A	Q	H	L	N	V	E	K	S	S	S	S	R	D	A	L	V	K	A	L	Y	G	R	L	F	L	W	L	V	K	K	I	N	N	V	L	C	S	E	.	R
Template Known Secondary structure													T	S											S		B				T	.	.	.	.	.	T	S			B																																						S	.
Template Predicted Secondary structure																																.	.	.	.	.																																												.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E	K	I	Q	W	T	P	I	K	Y	.	F	D	N	K	V	V	C	D	L	I	E	A	R	R	P	P	G	I
Query Conservation																																																															.
Alig confidence																																																															.
Template Conservation
Template Sequence		K	A	Y	F	I	G	V	L	D	I	S	G	F	E	I	F	K	V	N	S	F	E	Q	L	C	I	N	Y	T	N	E	K	L	Q	Q	F	F	N	H	H	M	F	K	V	E	Q	E	E	Y	L	K	E	K	I	N	W	T	F	I	D	F	G	L	D	S	Q	A	T	I	D	L	I	D	G	R	Q	P	P	G	I
Template Known Secondary structure			S															S	S	B																																G	G	G										S	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.					.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																														.								.	.	.	.
Query SS confidence																														.								.	.	.	.
Query Sequence		F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	.	F	T	T	N	P	H	F	.	.	.	.	D	L	R	S	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	V	E	L	I	G
Query Conservation																														.								.	.	.	.
Alig confidence												.	.	.	.															.								.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		L	A	L	L	D	E	Q	S	V	F	.	.	.	.	P	N	A	T	D	N	T	L	I	T	K	L	H	S	H	F	S	K	K	N	A	K	Y	E	E	P	R	F	S	K	T	E	F	G	V	T	H	Y	A	G	Q	V	M	Y	E	I	Q	D	W	L	E	K	N	K	D	P	L	Q	Q	D	L	E	L	C	F	K
Template Known Secondary structure									T	T	S	.	.	.	.	T	T															T	T	S	S	T	T					S	S		S	S							T	T								T	T					T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		526	.	.	.	530	.	.	.	.	.					.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.				.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		T	T	T	N	T	F	L	A	T	I	F	P	D	T	V	D	R	E	S	K	R	R	P	.	.	.	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A	Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L	H	Q	I	K	Y	L	G	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		D	S	S	D	N	V	V	T	K	L	F	N	D	P	N	I	A	S	R	A	K	K	G	A	N	F	I	T	V	A	A	Q	Y	K	E	Q	L	A	S	L	M	A	T	L	E	T	T	N	P	H	F	V	R	C	I	I	P	N	N	K	Q	L	P	A	K	L	E	D	K	V	V	L	D	Q	L	R	C	N	G	V
Template Known Secondary structure		T		S	S															S		B		S	S	S	B																			T	T	S										S		S	S			T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V	K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T	P	E	T	L	F	A	L	E
Query Conservation
Alig confidence																																						.	.	.	.	.																																.
Template Conservation																																						.	.	.	.	.																																.
Template Sequence		L	E	G	I	R	I	T	R	K	G	F	P	N	R	I	I	Y	A	D	F	V	K	R	Y	Y	L	L	A	P	N	V	P	R	D	A	E	.	.	.	.	.	D	S	Q	K	A	T	D	A	V	L	K	H	L	N	I	D	P	E	Q	Y	R	F	G	I	T	K	I	F	F	R	A	.	G	Q	L	A	R	I	E
Template Known Secondary structure									T	T	S															G	G	G	S	T	T			S			S	.	.	.	.	.													T	T			T	T	S					S	S						T	.	T
Template Predicted Secondary structure																																						.	.	.	.	.																																.
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.						.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.		.	750	.	.	.	.	.
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	R	D	R	Y	W	H	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	I	D	A	A	T	K	I	Q	R	T	I	R	E	R	K	E	G	N	K	Y	E	K	L	R	D	Y	G	T	K	V	L	G	G	R	K	E	R	R	S	M	S	L	L	G	Y	R	A	F	M	G	D	Y	L	S	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	R	E	Q	R	L	G	S	E	Q	T	K	S	D	Y	L	K	R	A	N	E	L	V	Q	W	I	N	D	K	Q	A	S	L	E	S	R	D	F	G	D	S	I	E	S	V	Q	S	F	M	N	A	H	K	E	Y	K	K	T	E	K	P	P	K	G	Q	E	V	S	E	L	E	A	I	Y	N	S	L	Q	T
Template Known Secondary structure																																				T						S	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.
		792	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		836	.	.	.