Job Description Q04439 Confidence 100.00% Date Mon Jul 2 19:30:40 BST 2012 Rank 6 Aligned Residues 720 % Identity 35% Template c1br4E_ PDB info PDB header:muscle protein Chain: E: PDB Molecule:myosin; PDBTitle: smooth muscle myosin motor domain-essential light chain2 complex with mgadp.bef3 bound at the active site Resolution 3.62 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																	.												.
Query SS confidence																	.												.
Query Sequence		I	L	K	R	G	A	R	K	K	V	H	Q	E	P	A	.	K	R	S	A	N	I	K	K	A	T	F	.	D	S	S	K	K	K	E	V	G	V	S	D	L	T	L	L	S	K	I	S	D	E	A	I	N	E	N	L	K	K	R	F	L	N	A	T	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R
Query Conservation																	.												.
Alig confidence																	.												.
Template Conservation
Template Sequence		I	K	E	E	K	G	D	E	V	T	V	E	L	Q	E	N	G	K	K	V	T	L	S	K	D	D	I	Q	K	M	N	P	P	K	F	S	K	V	E	D	M	A	E	L	T	C	L	N	E	A	S	V	L	H	N	L	R	E	R	Y	F	S	G	L	I	Y	T	Y	S	G	L	F	C	V	V	I	N	P	Y	K
Template Known Secondary structure							S	S							T	T	T								T	T	S		B					G	G	G	T	T		S	B	G	G	G		S	S			T	T												T	T					B	B	T	T	B								S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	G	I	Y	T	D	A	V	M	N	E	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	M	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	S	T	H	T	E	S	I	G	K	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	P	I	Y	S	E	K	I	I	D	M	Y	K	G	K	K	R	H	E	M	P	P	H	I	Y	A	I	A	D	T	A	Y	R	S	M	L	Q	D	R	E	D	Q	S	I	L	C	T	G	E	S	G	A	G	K	T	E	N	T	K	K	V	I	Q	Y	L	A	V	V	A	S	S	P	S	F	S	Y	G	E	L
Template Known Secondary structure				S			S								T	T			S	S	S	S																			T											T	T	S																	S									S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	N	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	S	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	Q	L	L	Q	A	N	P	I	L	E	A	F	G	N	A	K	T	V	K	N	D	N	S	S	R	F	G	K	F	I	R	I	N	F	D	V	T	G	Y	I	V	G	A	N	I	E	T	Y	L	L	E	K	S	R	A	I	R	Q	A	K	D	E	R	T	F	H	I	F	Y	Y	L	I	A	G	A	S	E	Q
Template Known Secondary structure					T	T	S	S					T	G	G	G					T	T							S	B									T	T	S										B				G	G	G	S	S				T	T			S		T									S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		Y	R	Q	T	F	G	V	Q	K	P	E	Q	Y	V	Y	T	A	A	A	G	C	I	S	A	E	T	I	D	D	L	Q	D	Y	Q	E	T	L	K	A	M	R	V	I	G	L	G	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	V	S	F	I	E	N	E	.	E	G	N	A	Q	V	R
Query Conservation																																																																										.
Alig confidence																							.																																																			.
Template Conservation																							.
Template Sequence		M	R	N	D	L	L	L	E	G	F	N	N	Y	T	F	L	S	N	G	H	V	.	P	I	P	A	Q	Q	D	D	E	M	F	Q	E	T	L	E	A	M	T	I	M	G	F	T	E	E	E	Q	T	S	I	L	R	V	V	S	S	V	L	Q	L	G	N	I	V	F	K	K	E	R	N	T	D	Q	A	S	M	P
Template Known Secondary structure					T	T	T				S	S	S		T	T	S	T	T	S			.			T	T																		T																			T	T	T							T	T	T						S
Template Predicted Secondary structure																							.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	S	V	T	D	F	V	A	Y	L	L	Q	I	D	S	Q	L	L	I	K	S	L	V	E	R	I	M	E	T	N	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	I	V	Q	A	D	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	S	R	V	N	K	S	L	Q	A	F	P
Query Conservation
Alig confidence																																	.	.	.	.	.																																											.	.
Template Conservation																																	.	.	.	.	.																																											.	.
Template Sequence		D	N	T	A	A	Q	K	V	C	H	L	M	G	I	N	V	T	D	F	T	R	S	I	L	T	P	R	I	K	V	G	.	.	.	.	.	R	D	V	V	Q	K	A	Q	T	K	E	Q	A	D	F	A	I	E	A	L	A	K	A	K	F	E	R	L	F	R	W	I	L	T	R	V	N	K	A	L	D	A	.	.
Template Known Secondary structure			T											T	S											S						S	.	.	.	.	.	S	S								S																																	.	.
Template Predicted Secondary structure																																	.	.	.	.	.																																											.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410						.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.		.	.	.
Predicted Secondary structure																																																																	.													.
Query SS confidence																																																																	.													.
Query Sequence		G	A	E	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	S	E	Q	E	T	Y	E	R	E	K	I	Q	W	T	P	I	K	Y	F	.	D	N	K	V	V	C	D	L	I	E	A	R	.	R	P	P
Query Conservation																																																																	.													.
Alig confidence		.	.	.																																																													.													.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	F	L	G	I	L	D	I	A	G	F	E	I	F	E	I	N	S	F	E	Q	L	C	I	N	Y	T	N	E	K	L	Q	Q	L	F	N	H	T	M	F	I	L	E	Q	E	E	Y	Q	R	E	G	I	E	W	N	F	I	D	F	G	L	D	L	Q	P	C	I	E	L	I	E	R	P	T	N	P	P
Template Known Secondary structure		.	.	.															S	S	B		S																					T													S																T	T	S			S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.						.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																.												.	.	.	.	.
Query SS confidence																																.												.	.	.	.	.
Query Sequence		G	I	F	A	A	M	N	D	S	V	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	L	.	F	T	T	N	P	H	F	D	L	R	S	.	.	.	.	.	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	D	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	V	E
Query Conservation																																.												.	.	.	.	.
Alig confidence														.	.	.	.															.												.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		G	V	L	A	L	L	D	E	E	C	W	F	.	.	.	.	P	K	A	T	D	T	S	F	V	E	K	L	I	Q	E	Q	G	N	H	A	K	F	Q	K	S	K	Q	L	K	D	K	T	E	F	C	I	L	H	Y	A	G	K	V	T	Y	N	A	S	A	W	L	T	K	N	M	D	P	L	N	D	N	V	T	S
Template Known Secondary structure											T	T	S	.	.	.	.	T	T															T	T		T	T					S			S	S	S								S	S								T	T	S					T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.					.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	T	T	T	N	T	F	L	A	T	I	F	P	D	T	V	D	R	E	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	D	L	V	E	T	L	S	K	A	Q	P	S	Y	I	R	T	I	K	P	N	E	T	K	S	P	N	D	Y	D	D	R	Q	V	L	H	Q	I	K	Y	L	G	L
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence		L	L	N	Q	S	S	D	K	F	V	A	D	L	W	K	D	V	D	R	I	V	G	L	F	R	.	.	T	V	G	Q	L	Y	K	E	Q	L	T	K	L	M	T	T	L	R	N	T	N	P	N	F	V	R	C	I	I	P	N	H	E	K	R	A	G	K	L	D	A	H	L	V	L	E	Q	L	R	C	N	G	V
Template Known Secondary structure					T		S								S	S			S	S							.	.								T	T									T	T	S												T	T			T	T													T	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.			.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	V	F	E	K	F	V	E	R	F	Y	L	L	S	P	H	C	S	Y	A	G	D	Y	T	W	Q	G	D	T	L	D	A	V	K	Y	I	L	Q	D	S	S	I	P	Q	Q	E	Y	Q	L	G	V	T	S	V	F	I	K	T	P	E	T	L	F	A	L	E
Query Conservation
Alig confidence																																	.	.	.	.																																						.
Template Conservation																																	.	.	.	.																																						.
Template Sequence		L	E	G	I	R	I	C	R	Q	G	F	P	N	R	I	V	F	Q	E	F	R	Q	R	Y	E	I	L	A	A	N	A	.	.	.	.	I	P	K	G	F	M	D	G	K	Q	A	C	I	L	M	I	K	A	L	E	L	D	P	N	L	Y	R	I	G	Q	S	K	I	F	F	R	T	.	G	V	L	A	H	L	E
Template Known Secondary structure											S					B									T	T	T	T		S	S	S	.	.	.	.	S		S	S															T	T			T	T	T					S	S	S					T	.	T	T	T
Template Predicted Secondary structure																																	.	.	.	.																																						.
Template SS confidence
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.					.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	R	D	R	Y	W	H	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	I	D	A	A	T	K	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	R	D	L	K	I	T	D	V	I	I	A	F	Q	A	Q	C	R	G	Y	L	A	R	K	A	F	A	K	R	Q	Q	Q
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.