Phyre 2 alignment of Q04439 with c3vkgB_

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Job Description | Q04439
Confidence | 91.38% | Date | Mon Jul 2 19:30:40 BST 2012
Rank | 235 | Aligned Residues | 42
% Identity | 26% | Template | c3vkgB_
PDB info | PDB header:motor protein | Chain: B: PDB Molecule:dynein heavy chain, cytoplasmic; | PDBTitle: crystal structure of an motor protein
Resolution | 2.81 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | S | M | Y | Y | N | M | K | S | Y | N | E | N | Q | C | V | I | I | S | G | E | S | G | A | G | K | T | E | A | A | K | R | I | M | Q | Y | I | A | A | A | S | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | K | I | L | Q | L | H | Q | I | L | N | I | N | H | G | V | M | M | V | G | P | S | G | G | G | K | T | T | S | W | E | V | Y | L | E | A | I | E | Q | V | D | N
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2257 | . | . | 2260 | . | . | . | . | . | . | . | . | . | 2270 | . | . | . | . | . | . | . | . | . | 2280 | . | . | . | . | . | . | . | . | . | 2290 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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