Phyre 2 alignment of Q04439 with c4dckA_

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Job Description | Q04439
Confidence | 78.84% | Date | Mon Jul 2 19:30:40 BST 2012
Rank | 497 | Aligned Residues | 28
% Identity | 18% | Template | c4dckA_
PDB info | PDB header:transport protein/signaling protein | Chain: A: PDB Molecule:sodium channel protein type 5 subunit alpha; | PDBTitle: crystal structure of the c-terminus of voltage-gated sodium channel in2 complex with fgf13 and cam
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 732 | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | F | L | Q | R | R | I | D | A | A | T | K | I | Q | R | T | I | R | E | R | K | E | G | N | K | Y | E | K | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | R | K | H | E | E | V | S | A | M | V | I | Q | R | A | F | R | R | H | L | L | Q | R | S | L | K | H | A
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1897 | . | . | 1900 | . | . | . | . | . | . | . | . | . | 1910 | . | . | . | . | . | . | . | . | . | 1920 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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