Phyre 2 alignment of Q04439 with c3fmoB_

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Job Description | Q04439
Confidence | 85.34% | Date | Mon Jul 2 19:30:40 BST 2012
Rank | 410 | Aligned Residues | 39
% Identity | 31% | Template | c3fmoB_
PDB info | PDB header:oncoprotein/hydrolase | Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b; | PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19
Resolution | 2.51 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |  | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | H | V | F | A | I | A | E | S | M | Y | Y | N | M | K | . | S | Y | N | E | N | Q | C | V | I | I | S | G | E | S | G | A | G | K | T | E | A | A | K | R | I | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | R | P | S | K | I | Q | E | N | A | L | P | L | M | L | A | E | P | P | Q | N | . | . | L | I | A | Q | S | Q | S | G | T | G | K | T | A | A | F | V | L | A | M
Template Known Secondary structure |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S | S |  |  |  | . | . |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |  |  | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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