05/07/2012 05:05:44 : INFO  : Run start: Thu Jul  5 05:05:44 BST 2012
05/07/2012 05:05:44 : INFO  : Initialised job
05/07/2012 05:05:44 : INFO  : Initialised job:
Sequence
>batch____
MAILKRGARKKVHQEPAKRSANIKKATFDSSKKKEVGVSDLTLLSKISDEAINENLKKRF
LNATIYTYIGHVLISVNPFRDLGIYTDAVMNEYKGKNRLEVPPHVFAIAESMYYNMKSYN
ENQCVIISGESGAGKTEAAKRIMQYIAAASSTHTESIGKIKDMVLATNPLLESFGCAKTL
RNNNSSRHGKYLEIKFNNQFEPCAGNITNYLLEKQRVVSQIKNERNFHIFYQFTKGASDA
YRQTFGVQKPEQYVYTAAAGCISAETIDDLQDYQETLKAMRVIGLGQEEQDQIFRMLAAI
LWIGNVSFIENEEGNAQVRDTSVTDFVAYLLQIDSQLLIKSLVERIMETNHGMKRGSVYH
VPLNIVQADAVRDALAKAIYNNLFDWIVSRVNKSLQAFPGAEKSIGILDIYGFEIFEHNS
FEQICINYVNEKLQQIFIQLTLKSEQETYEREKIQWTPIKYFDNKVVCDLIEARRPPGIF
AAMNDSVATAHADSNAADQAFAQRLNLFTTNPHFDLRSNKFVIKHYAGDVTYDIDGITDK
NKDQLQKDLVELIGTTTNTFLATIFPDTVDRESKRRPPTAGDKIIKSANDLVETLSKAQP
SYIRTIKPNETKSPNDYDDRQVLHQIKYLGLQENVRIRRAGFAYRQVFEKFVERFYLLSP
HCSYAGDYTWQGDTLDAVKYILQDSSIPQQEYQLGVTSVFIKTPETLFALEHMRDRYWHN
MAARIQRAWRRFLQRRIDAATKIQRTIRERKEGNKYEKLRDYGTKVLGGRKERRSMSLLG
YRAFMGDYLSCNESKSKGAYIKRQVSIKEKVIFSIHGEALHTKFGRSAQRLKKTFLLTPT
TLYIVGQTLVQNAMTYTQDYKIDVRNIQAVSLTNLQDDWVAIKLASSGQPDPLINTYFKT
ELITHLKRLNDKIQIKIGSAIEYQKKPGKLHSVKCQINESAPKYGDIYKSSTISVRRGNP
PNSQVHKKPRKKSSISSGYHASSSQATRRPVSIAAAQHVPTAPASRHSKKPAPPPPGMQN
KAATRRSVPNPASTLTASQSNARPSPPTAATRATPAATPAAAAMGSGRQANIPPPPPPPP
PSSKPKEPMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTA
YMKPHSGNNNIPTPPQNRDVPKPVLNSVQHDNTSANVIPAAAQASLGDGLANALAARANK
MRLESDDEEANEDEEEDDW

05/07/2012 05:05:44 : INFO  : Checked sequence
05/07/2012 05:05:44 : INFO  : Finding homologues with PSI-BLAST
05/07/2012 05:05:44 : INFO  : PSI-BLAST 3 iterations
05/07/2012 05:14:46 : INFO  : PSI-BLAST 5 iterations
05/07/2012 05:32:17 : INFO  : Finished PSI-BLAST
05/07/2012 05:32:17 : INFO  : Running Buildali to generate a3m file
05/07/2012 07:12:03 : INFO  : Converting to HMM
05/07/2012 07:12:22 : INFO  : Calibrating HMM
05/07/2012 07:12:48 : INFO  : Searching HMM database
05/07/2012 07:33:32 : INFO  : Finished buildali
05/07/2012 07:33:32 : INFO  : Predicting secondary structure
05/07/2012 07:33:32 : INFO  : Predicted secondary structure (PSI-Pred)
05/07/2012 07:33:32 : INFO  : Predicting Disordered regions
05/07/2012 07:33:32 : INFO  : Predicted Disorder (Disopred)
05/07/2012 07:33:32 : INFO  : Running memsat_svm check
05/07/2012 07:39:29 : INFO  : Globular protein
05/07/2012 07:39:29 : INFO  : Predicted Transmembrane (memsat_svm) ID '7761dbb0c220a86b'
05/07/2012 07:39:29 : INFO  : Initialising fold library search
05/07/2012 07:39:29 : INFO  : Initialised search input
05/07/2012 07:39:29 : INFO  : Building Ensemble models
05/07/2012 07:39:29 : INFO  : Building hh.c3j04A_.model.1.pdb
05/07/2012 07:39:30 : INFO  : Building hh.c1i84V_.model.2.pdb
05/07/2012 07:39:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c1i84V_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c1i84V_.2.pdb
05/07/2012 07:39:31 : INFO  : Building hh.c2bkiA_.model.3.pdb
05/07/2012 07:39:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c2bkiA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c2bkiA_.3.pdb
05/07/2012 07:39:31 : INFO  : Building hh.c2otgA_.model.4.pdb
05/07/2012 07:39:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c2otgA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c2otgA_.4.pdb
05/07/2012 07:39:32 : INFO  : Building hh.c2bkhA_.model.5.pdb
05/07/2012 07:39:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c2bkhA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c2bkhA_.5.pdb
05/07/2012 07:39:32 : INFO  : Building hh.c1br4E_.model.6.pdb
05/07/2012 07:39:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c1br4E_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c1br4E_.6.pdb
05/07/2012 07:39:33 : INFO  : Building hh.c1mv3A_.model.7.pdb
05/07/2012 07:39:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/hh.c1mv3A_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7761dbb0c220a86b/c1mv3A_.34.pdb
05/07/2012 07:39:33 : INFO  : Building c3j04A_.1.pdb
05/07/2012 07:39:34 : INFO  : Building c1i84V_.2.pdb
05/07/2012 07:39:35 : INFO  : Building c2bkiA_.3.pdb
05/07/2012 07:39:35 : INFO  : Building c2otgA_.4.pdb
05/07/2012 07:39:36 : INFO  : Building c2bkhA_.5.pdb
05/07/2012 07:39:36 : INFO  : Building c1br4E_.6.pdb
05/07/2012 07:39:37 : INFO  : Building c2ycuA_.7.pdb
05/07/2012 07:39:38 : INFO  : Building c2dfsA_.8.pdb
05/07/2012 07:39:39 : INFO  : Building c1g8xB_.9.pdb
05/07/2012 07:39:39 : INFO  : Building c3dtpA_.10.pdb
05/07/2012 07:39:40 : INFO  : Building c1oe9A_.11.pdb
05/07/2012 07:39:40 : INFO  : Building d1kk8a2.12.pdb
05/07/2012 07:39:41 : INFO  : Building d1w7ja2.13.pdb
05/07/2012 07:39:41 : INFO  : Building c2vb6A_.14.pdb
05/07/2012 07:39:42 : INFO  : Building d1d0xa2.15.pdb
05/07/2012 07:39:42 : INFO  : Building c1w8jD_.16.pdb
05/07/2012 07:39:43 : INFO  : Building c1w9iA_.17.pdb
05/07/2012 07:39:43 : INFO  : Building d1lkxa_.18.pdb
05/07/2012 07:39:44 : INFO  : Building c1br2C_.19.pdb
05/07/2012 07:39:45 : INFO  : Building c1o1aP_.20.pdb
05/07/2012 07:40:34 : INFO  : Finished HH model building
05/07/2012 07:40:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/07/2012 07:40:48 : INFO  : html domain output complete ID '7761dbb0c220a86b'
05/07/2012 20:32:00 : INFO  : Run end  : Thu Jul  5 20:32:00 BST 2012
