Job Description P40073 Confidence 33.15% Date Mon Jul 2 19:22:13 BST 2012 Rank 246 Aligned Residues 100 % Identity 8% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		43	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure									.	.	.	.	.																																								.	.	.	.
Query SS confidence									.	.	.	.	.																																								.	.	.	.
Query Sequence		V	S	W	V	I	A	I	.	.	.	.	.	G	G	S	I	S	S	A	S	T	N	E	S	F	P	R	F	T	W	W	G	I	V	Y	Q	F	L	I	I	C	S	L	M	L	F	Y	C	F	D	L	.	.	.	.	V	D	H	Y	R	I	F	I	T	T	S	I	A	V	A	F	V	Y	N	T	N	S	A	T	N
Query Conservation									.	.	.	.	.																																								.	.	.	.
Alig confidence									.	.	.	.	.																																								.	.	.	.
Template Conservation
Template Sequence		V	D	W	L	L	T	V	P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L
Template Known Secondary structure																			S																														T		S				S	S	S																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Y	A	D	G	P	K	K	A	A	A	S	A	G	V	I	L	L	S	I	I	N	L	I	W	I	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	T	I	Q	R	Q	S	S	R	V	S	T	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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