Job Description P40073 Confidence 99.88% Date Mon Jul 2 19:22:13 BST 2012 Rank 1 Aligned Residues 193 % Identity 10% Template c1mv3A_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc Resolution UNK

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	P	L	E	N	S	L	H	R	A	R	R	R	G	N	R	N	T	T	P	Y	Q	N	N	V	Y	N	D	A	I	R	D	S	G	Y	A	T	Q	F	D	G	Y	P	Q	Q	Q	P	S	H	T	N	Y	V	S	S	T	A	L	A	G	F	E	N	T	Q	P	N	T	S	E	A	V	N	L	H	L	N	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	A	T	P	E	I	R	V	N	H	E	P	E	P	A	G	G	A	T	P	G	A	T	L	P	K	S	P	S	Q	L	R	K	G	P	P	V	P	P	P	P	K	H	T	P	S	K	E	V	K	Q	E	Q	I	L	S	L	F	E	D	T	F	V	P	E	I	S	V	T	T	P	S	Q	P	A	E	A	S	E
Template Known Secondary structure																																	S										S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		Q	Q	R	I	N	S	A	S	N	A	K	E	T	N	D	N	S	N	N	Q	T	N	T	N	I	.	G	N	T	F	D	T	D	F	S	N	G	N	T	E	T	T	M	G	D	T	L	G	L	Y	S	D	I	G	D	D	N	F	I	Y	K	A	K	A	L	Y	P	Y	D	A	D	D	D	D	A	Y	E	I	S	F
Query Conservation																											.
Alig confidence																											.																																																	.	.
Template Conservation																																																																												.	.
Template Sequence		V	A	G	G	T	Q	P	A	A	G	A	Q	E	P	G	E	T	A	A	S	E	A	A	S	S	S	L	P	A	V	V	V	E	T	F	P	A	T	V	N	G	T	V	E	G	G	S	G	A	G	R	L	D	L	P	P	G	F	M	F	K	V	Q	A	Q	H	D	Y	T	A	T	D	T	D	.	.	E	L	Q	L
Template Known Secondary structure					S	S																																															S	S			T	T								S	S		B				S	T	T	.	.				B
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430
		324	.	.	.	.	.	330	.	.							.	.	.	.	.	.	.	340	.	.	.										.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	N	E	I	L	Q	V	S	.	.	.	.	.	.	D	I	E	G	R	W	W	K	A	R	R	.	.	.	.	.	.	.	.	.	A	N	G	E	T	G	I	I	P	S	N	Y	V	Q	L	I
Query Conservation											.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	G	D	V	V	L	V	I	P	F	Q	N	P	E	E	Q	D	E	G	W	L	M	G	V	K	E	S	D	W	N	Q	H	K	K	L	E	K	C	R	G	V	F	P	E	N	F	T	E	R	V
Template Known Secondary structure			S	S									S		G	G	G	S		T	T												T	G	G	G	G	G	G	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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