07/07/2012 01:35:37 : INFO  : Run start: Sat Jul  7 01:35:37 BST 2012
07/07/2012 01:35:37 : INFO  : Initialised job
07/07/2012 01:35:37 : INFO  : Initialised job:
Sequence
>batch____
MSISSKIRPTPRKPSRMATDHSFKMKKFYADPFAISSISLAIVSWVIAIGGSISSASTNE
SFPRFTWWGIVYQFLIICSLMLFYCFDLVDHYRIFITTSIAVAFVYNTNSATNLVYADGP
KKAAASAGVILLSIINLIWILYYGGDNASPTNRWIDSFSIKGIRPSPLENSLHRARRRGN
RNTTPYQNNVYNDAIRDSGYATQFDGYPQQQPSHTNYVSSTALAGFENTQPNTSEAVNLH
LNTLQQRINSASNAKETNDNSNNQTNTNIGNTFDTDFSNGNTETTMGDTLGLYSDIGDDN
FIYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLID
GPEEMHR

07/07/2012 01:35:37 : INFO  : Checked sequence
07/07/2012 01:35:37 : INFO  : Finding homologues with PSI-BLAST
07/07/2012 01:35:37 : INFO  : PSI-BLAST 3 iterations
07/07/2012 01:37:50 : INFO  : PSI-BLAST 5 iterations
07/07/2012 01:40:18 : INFO  : Finished PSI-BLAST
07/07/2012 01:40:18 : INFO  : Running Buildali to generate a3m file
07/07/2012 01:47:23 : INFO  : Converting to HMM
07/07/2012 01:47:24 : INFO  : Calibrating HMM
07/07/2012 01:47:33 : INFO  : Searching HMM database
07/07/2012 01:54:29 : INFO  : Finished buildali
07/07/2012 01:54:29 : INFO  : Predicting secondary structure
07/07/2012 01:54:29 : INFO  : Predicted secondary structure (PSI-Pred)
07/07/2012 01:54:29 : INFO  : Predicting Disordered regions
07/07/2012 01:54:29 : INFO  : Predicted Disorder (Disopred)
07/07/2012 01:54:29 : INFO  : Running memsat_svm check
07/07/2012 01:55:12 : INFO  : Globular protein
07/07/2012 01:55:12 : INFO  : Predicted Transmembrane (memsat_svm) ID '65f7b5591e37c99a'
07/07/2012 01:55:12 : INFO  : Initialising fold library search
07/07/2012 01:55:12 : INFO  : Initialised search input
07/07/2012 01:55:12 : INFO  : Building Ensemble models
07/07/2012 01:55:12 : INFO  : Building hh.c1mv3A_.model.1.pdb
07/07/2012 01:55:13 : INFO  : Building hh.c2rqrA_.model.2.pdb
07/07/2012 01:55:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/hh.c2rqrA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/c2rqrA_.2.pdb
07/07/2012 01:55:13 : INFO  : Building hh.c1griA_.model.3.pdb
07/07/2012 01:55:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/hh.c1griA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/c1griA_.3.pdb
07/07/2012 01:55:14 : INFO  : Building hh.c2vknA_.model.4.pdb
07/07/2012 01:55:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/hh.c2vknA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/65f7b5591e37c99a/c2vknA_.6.pdb
07/07/2012 01:55:14 : INFO  : Building c1mv3A_.1.pdb
07/07/2012 01:55:14 : INFO  : Building c2rqrA_.2.pdb
07/07/2012 01:55:15 : INFO  : Building c1griA_.3.pdb
07/07/2012 01:55:15 : INFO  : Building c2lqnA_.4.pdb
07/07/2012 01:55:15 : INFO  : Building c2ebpA_.5.pdb
07/07/2012 01:55:15 : INFO  : Building c2vknA_.6.pdb
07/07/2012 01:55:16 : INFO  : Building c2jxbA_.7.pdb
07/07/2012 01:55:16 : INFO  : Building c2dbkA_.8.pdb
07/07/2012 01:55:16 : INFO  : Building c2oi3A_.9.pdb
07/07/2012 01:55:17 : INFO  : Building c2dx1A_.10.pdb
07/07/2012 01:55:17 : INFO  : Building c2ed0A_.11.pdb
07/07/2012 01:55:17 : INFO  : Building d1ng2a2.12.pdb
07/07/2012 01:55:18 : INFO  : Building c2l3sA_.13.pdb
07/07/2012 01:55:18 : INFO  : Building c2eyxA_.14.pdb
07/07/2012 01:55:18 : INFO  : Building c1x6bA_.15.pdb
07/07/2012 01:55:19 : INFO  : Building c2i0nA_.16.pdb
07/07/2012 01:55:19 : INFO  : Building c2eyyA_.17.pdb
07/07/2012 01:55:19 : INFO  : Building c2ysqA_.18.pdb
07/07/2012 01:55:19 : INFO  : Building c2cudA_.19.pdb
07/07/2012 01:55:20 : INFO  : Building d2hspa_.20.pdb
07/07/2012 01:55:22 : INFO  : Finished HH model building
07/07/2012 01:55:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
07/07/2012 01:55:26 : INFO  : html domain output complete ID '65f7b5591e37c99a'
07/07/2012 02:08:53 : INFO  : Run end  : Sat Jul  7 02:08:53 BST 2012
