Job Description P38753 Confidence 55.86% Date Mon Jul 2 19:20:20 BST 2012 Rank 299 Aligned Residues 132 % Identity 17% Template c4a0cB_ PDB info PDB header:cell cycle Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1; PDBTitle: structure of the cand1-cul4b-rbx1 complex Resolution 3.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																													.	.	.	.											.	.	.	.
Query SS confidence																													.	.	.	.											.	.	.	.
Query Sequence		S	S	A	I	K	I	R	N	A	L	L	K	A	T	D	P	K	L	R	S	D	N	W	Q	Y	I	L	.	.	.	.	D	V	C	D	L	V	K	E	D	P	.	.	.	.	E	D	N	G	Q	E	V	M	S	L	I	E	K	R	L	E	Q	Q	D	A	N	V	I	L	R	T	L	S	L	T	V	S	L	A	E
Query Conservation																													.	.	.	.											.	.	.	.
Alig confidence														.	.	.	.	.											.	.	.	.											.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		S	A	S	Y	H	I	S	N	L	L	E	K	.	.	.	.	.	M	T	S	S	D	K	D	F	R	F	M	A	T	N	D	L	M	T	E	L	Q	K	D	S	I	K	L	D	D	D	S	E	R	K	V	V	K	M	I	L	K	L	L	E	D	K	N	G	E	V	Q	N	L	A	V	K	C	L	G	P	L	V	S
Template Known Secondary structure			T										T	.	.	.	.	.	T	S	S	S																	S	S			S				S													T	T	S		S											T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.															90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		N	C	G	S	R	L	R	Q	E	I	S	S	K	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	L	L	Y	A	L	I	E	S	.	H	S	V	H	I	T	L	K	K	A	V	T	D	V	V	K	Q	L	S	D	S	F	K	D	D	P	S	L	R	A	M	G	D	L	Y	D	K	I	K	R
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		K	V	K	E	Y	Q	V	E	T	I	V	D	T	L	C	T	N	M	L	S	D	K	E	Q	L	R	D	I	S	S	I	G	L	K	T	V	I	G	E	L	P	P	G	S	A	L	A	A	N	V	C	K	K	I	T	G	R	L	T	S	A	I	A	K	Q	E	D	V	S	V	Q	L	E	A	L	D	I	M	A	D
Template Known Secondary structure		S	S															T	T	T		S	S	T	T													G	G	G	S																							S		T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions