Job Description P38753 Confidence 30.84% Date Mon Jul 2 19:20:20 BST 2012 Rank 325 Aligned Residues 132 % Identity 15% Template c3ibvB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:exportin-t; PDBTitle: karyopherin cytosolic state Resolution 3.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		S	A	I	K	I	R	N	A	L	L	K	A	T	D	P	K	L	R	S	D	N	W	Q	Y	I	L	D	V	C	D	L	V	K	E	D	P	E	D	N	G	Q	E	V	M	S	L	I	E	K	R	L	E	Q	Q	D	A	N	V	I	L	R	T	L	S	L	T	V	S	L	A	E	N	.	.	.	.	C	G	S	R
Query Conservation																																																																										.	.	.	.
Alig confidence																																							.													.																						.	.	.	.
Template Conservation																																							.													.
Template Sequence		S	A	Q	D	V	E	N	A	V	E	A	A	L	D	P	S	V	G	P	I	I	K	Q	Q	A	T	D	F	I	G	S	L	R	S	S	S	T	.	G	W	K	I	C	H	E	I	F	S	E	K	.	T	K	Y	K	P	S	T	R	L	I	C	L	Q	T	L	S	E	K	V	R	E	W	N	N	E	S	N	L	L
Template Known Secondary structure																T	T	S		T	T															S	T	T	.									T	T			.	S	S	S																					T	T	T	S
Template Predicted Secondary structure																																							.													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	E	I	S	S	K	N	F	T	S	L	L	Y	A	L	I	E	S	H	S	V	H	I	T	L	K	K	A	V	T	D	V	V	K	Q	L	S	D	S	F	K	D	D	P	S	L	R	A	M	G	D	L	Y	D	K	I	K	R
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		E	L	Q	M	I	R	.	.	D	S	V	W	S	Y	I	K	E	L	S	F	L	D	E	P	A	Y	I	S	N	A	V	Q	H	L	L	T	L	L	F	L	Q	L	Y	P	S	N	W	N	D	F	F	A	S	L	Q	G	V	I	A	A
Template Known Secondary structure								.	.									S	T	T	S	T	T	S																				T	T	T	T		T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions