Job Description P38753 Confidence 96.54% Date Mon Jul 2 19:20:20 BST 2012 Rank 234 Aligned Residues 122 % Identity 18% Template c3gq2B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain Resolution 2.18 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		R	N	A	L	L	K	A	T	D	P	K	L	R	.	.	.	.	S	D	N	W	Q	Y	I	L	D	V	C	D	L	V	K	E	D	P	E	D	N	G	Q	E	V	M	S	L	I	E	K	R	L	E	Q	Q	D	A	N	V	I	L	R	T	L	S	L	T	V	S	L	A	E	N	C	G	S	R	L	R	Q	E	I
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																		.		.	.	.	.
Template Conservation																																				.		.	.	.	.
Template Sequence		D	S	E	I	I	G	Y	A	L	D	T	L	Y	N	I	I	S	N	D	E	E	D	L	G	S	Q	F	T	E	I	F	I	K	Q	.	Q	.	.	.	.	E	N	V	T	L	L	L	S	L	L	E	E	F	D	F	H	V	R	W	P	G	V	K	L	L	T	S	L	L	K	Q	L	G	P	Q	V	Q	Q	I	I
Template Known Secondary structure																				S														S	S	.	T	.	.	.	.											T																					S
Template Predicted Secondary structure																																				.		.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		85	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		S	S	K	.	N	F	T	S	L	L	Y	A	L	I	E	S	H	S	V	H	I	T	L	K	K	A	V	T	D	V	V	K	Q	L	S	D	S	F	K	D	D	P	S	L	R	A	M	G	D	L	Y	D	K	I
Query Conservation					.
Alig confidence					.														.	.
Template Conservation																			.	.
Template Sequence		L	V	S	P	M	G	V	S	R	L	M	D	L	L	A	D	S	.	.	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	R	S	N	G	A	I	Q	K	I	V	A	F	E	N	A	F	E	R	L
Template Known Secondary structure				S	T	T							G	G	G	T		S	.	.	S																T	T											T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions