Job Description P38753 Confidence 92.84% Date Mon Jul 2 19:20:20 BST 2012 Rank 245 Aligned Residues 94 % Identity 21% Template c2w3cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115 Resolution 2.22 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		E	V	M	S	L	I	E	K	R	L	E	Q	Q	D	A	N	V	I	L	R	T	L	S	L	T	V	S	L	A	E	N	C	G	S	R	L	R	Q	E	I	S	S	K	.	N	F	T	S	L	L	Y	A	L	I	E	S	H	S	V	H	I	T	L	K	K	A	V	T	D	V	V	K	Q	L	S	D	S	F	K	D
Query Conservation																																													.
Alig confidence																																													.														.	.																	.	.	.
Template Conservation																																																											.	.																	.	.	.
Template Sequence		E	N	V	T	L	L	L	S	L	L	E	E	F	D	F	H	V	R	W	P	G	V	K	L	L	T	S	L	L	K	Q	L	G	P	Q	V	Q	Q	I	I	L	V	S	P	M	G	V	S	R	L	M	D	L	L	A	D	S	.	.	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	.	.	.	R	S
Template Known Secondary structure											T	T																					S											S	T	T							G	G	G	G		S	.	.	S																.	.	.	T	T
Template Predicted Secondary structure																																																											.	.																	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.
		124	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.
Query Sequence		D	P	S	L	R	A	M	G	D	.	.	.	.	.	.	.	L	Y	D	K	I	K	R	K	A	P	Y
Query Conservation											.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	I	Q	K	I	V	A	F	E	N	A	F	E	R	L	L	D	I	I	S	E	E	G	N	S
Template Known Secondary structure												T	T												T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions