Job Description P38753 Confidence 90.19% Date Mon Jul 2 19:20:20 BST 2012 Rank 255 Aligned Residues 86 % Identity 14% Template c2pjwV_ PDB info PDB header:endocytosis/exocytosis Chain: V: PDB Molecule:vacuolar protein sorting-associated protein 27; PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for2 ubiquitin-dependent sorting Resolution 3.01 Å

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		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	F	S	Q	K	T	T	I	D	Q	L	H	N	S	L	N	A	A	S	K	T	G	N	S	N	E	V	L	Q	D	P	H	I	G	D	M	Y	G	S	V	T	P	L	R	P	Q	V	T	R	M	L	G	K	Y	A	K	E	K	E	D	M	L	S	L	R	Q	V	L	A	N	A	E	R	S	Y	N	Q	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	S	D	E	E	K	D	S	I	Y	X	F	A	S	L	V	E	K	X	K	S	R	P	L	N	E	I	L	E	D	S	K	L	Q	N	L	A	Q	R	V	F	A	S	K	A	R	L	N	Y	A	L	N	D	K	A	Q	K	Y	N	T	L	I	E	X	N	G	K	I	S	E	I	X	N	I	Y	D	R	L	L
Template Known Secondary structure																							T		S		S	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		371	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	A	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	Q	L	Q	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions