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Job DescriptionP36006
Confidence100.00%DateMon Jul 2 19:17:52 BST 2012
Rank18Aligned Residues638
% Identity47%Templated1lkxa_
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Motor proteins
Resolution3.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  GISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNL
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Template Sequence  GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSM
Template Known Secondary structure 

SSGGG
SS
STT

SSS


SS

S

SSS

GGGS


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   910.........20.........30.........40.........50.........60.........70.........80........
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  KSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKF
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Template Sequence  RQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF
Template Known Secondary structure 



STTSSS
SS
BB

SS
SS
B
S
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   197..200.........210.........220.........230.........240....... ..250.........260.........270.....
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Query Sequence  NSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGV. QMPEQYIYTAAAGCTTADTIDDVKDYEG
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Template Sequence  NAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKI
Template Known Secondary structure 
TT




GGGGT


TT


BTTS
T

S
GGGSTT



TT

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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   276...280.........290.........300.........310 .........320.........330.........340.........350....
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Query Sequence  TLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIE. NEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMK
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Template Sequence  IVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSV. . . . . . .
Template Known Secondary structure  TT

TT

TT

SSTS
B


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   249250.........260.........270.........280.........290.........300.........310.........320.
 
   355....360.........370.........380.........390.........400.........410.........420.........430....
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Query Sequence  RGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQ
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Template Sequence  . . . . ISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQ
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B




S










SSB
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   336...340.........350.........360.........370.........380.........390.........400.........410.
 
   435....440.........450.........460.........470.........480.........490.........500...... ...510...
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Query Sequence  QIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLN. LFNSNPY
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Template Sequence  QLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKK. PIGLISLLDEACLI. . . . AKSTDQTFLDSICKQFEKNPH
Template Known Secondary structure  TTT







S


TTSS.SSSS....TT

SSSSTT
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   412.......420.........430.........440.........450. ........460..... ....470.........480......
 
   514.. ...520.........530.........540.........550.........560.........570.........580....
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Query Sequence  FEL. . . . . . . . . RANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKI
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Template Sequence  LQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLF. . . . . . . . . . . PETAGSQF
Template Known Secondary structure 
TTTS

TTS
TTTT
TT



T

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   487..490.........500.........510.........520.........530.........540....... ..550.....
 
   585....590.........600.........610.........620.........630.........640.........650.........660....
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Query Sequence  IKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSY
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Template Sequence  RNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKK. . .
Template Known Secondary structure  TTS


TT

TT


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SB

BSTTS
SSS

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   567..570.........580.........590.........600.........610.........620.........630.........640...
 
   665....670.........680.........690.........700.........710....
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Query Sequence  AGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMR
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Template Sequence  . . . . . . . . . . KQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKR
Template Known Secondary structure  ..........
TT


GGG
SSBSSST

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   653......660.........670.........680.........690..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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