Job Description P36006 Confidence 100.00% Date Mon Jul 2 19:17:52 BST 2012 Rank 17 Aligned Residues 652 % Identity 37% Template c1w9iA_ PDB info PDB header:myosin Chain: A: PDB Molecule:myosin ii heavy chain; PDBTitle: myosin ii dictyostelium discoideum motor domain s456y bound2 with mgadp-befx Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	I	K	K	G	A	R	R	K	D	V	K	E	P	K	K	R	S	A	K	I	K	K	.	A	T	F	D	A	N	K	K	K	E	V	G	I	S	D	L	T	L	L	S	K	I	S	D	E	S	I	N	E	N	L	K	K	R	F	K	N	G	I	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R	D
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		I	V	S	E	T	S	D	S	F	T	F	K	T	V	D	G	Q	D	R	Q	V	K	K	D	D	A	N	Q	R	N	P	I	K	F	D	G	V	E	D	M	S	E	L	S	Y	L	N	E	P	A	V	F	H	N	L	R	V	R	Y	N	Q	D	L	I	Y	T	Y	S	G	L	F	L	V	A	V	N	P	F	K	R
Template Known Secondary structure							S	S							T	T	S							T	T	T							G	G	G	T	T		S	B	G	G	G		S																	T	T							T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	Y	T	N	A	V	L	E	S	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	L	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	N	S	H	S	E	S	I	G	K	I	K
Query Conservation
Alig confidence																																																																											.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		I	P	I	Y	T	Q	E	M	V	D	I	F	K	G	R	R	R	N	E	V	A	P	H	I	F	A	I	S	D	V	A	Y	R	S	M	L	D	D	R	Q	N	Q	S	L	L	I	T	G	E	S	G	A	G	K	T	E	N	T	K	K	V	I	Q	Y	L	A	S	V	A	G	R	G	V	.	.	.	.	.	L	E
Template Known Secondary structure			S			S								T	T			G	G	G	S																													S	T	T	S	S																					.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	S	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	G	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	T	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	I	L	Q	A	N	P	I	L	E	A	F	G	N	A	K	T	T	R	N	N	N	S	S	R	F	G	K	F	I	E	I	Q	F	N	S	A	G	F	I	S	G	A	S	I	Q	S	Y	L	L	E	K	S	R	V	V	F	Q	S	E	T	E	R	N	Y	H	I	F	Y	Q	L	L	A	G	A	T	A	E	E
Template Known Secondary structure																				S	S		T	T			S	S										T	T	S														G	G	G	G	T				T	T			S	B
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	M	F	G	V	Q	M	P	E	Q	Y	I	Y	T	A	A	A	G	C	T	T	A	D	T	I	D	D	V	K	D	Y	E	G	T	L	E	A	M	R	T	I	G	L	V	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	I	S	F	I	E	N	E	E	G	N	A	Q	V	G	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	A	L	H	L	A	G	P	E	S	F	N	Y	L	N	Q	S	G	C	V	D	I	K	G	V	S	D	S	E	E	F	K	I	T	R	Q	A	M	D	I	V	G	F	S	Q	E	E	Q	M	S	I	F	K	I	I	A	G	I	L	H	L	G	N	I	K	F	E	K	G	A	G	E	G	A	V	L	K	D	K
Template Known Secondary structure						T				G	G	G		T	T	T	S	S	S	S					T	T																		T																					T							S	S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	T	D	F	V	A	Y	L	L	Q	V	D	A	S	L	L	V	K	C	L	V	E	R	I	M	Q	T	S	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	P	V	Q	A	T	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	D	R	V	N	V	S	L	Q	A	F	P	G	A
Query Conservation
Alig confidence																														.	.	.	.	.																																												.
Template Conservation																														.	.	.	.	.																																												.
Template Sequence		T	A	L	N	A	A	S	T	V	F	G	V	N	P	S	V	L	E	K	A	L	M	E	P	R	I	L	A	.	.	.	.	.	G	R	D	L	V	A	Q	H	L	N	V	E	K	S	S	S	S	R	D	A	L	V	K	A	L	Y	G	R	L	F	L	W	L	V	K	K	I	N	N	V	L	C	Q	.	E	R	K
Template Known Secondary structure												T												S						.	.	.	.	.	T	T																																										.	S
Template Predicted Secondary structure																														.	.	.	.	.																																												.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400						.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	A	E	Q	E	T	Y	E	R	E	K	I	K	W	T	P	I	K	Y	F	.	D	N	K	V	V	C	D	L	I	E	A	K	N	P	P	G	I	L
Query Conservation																																																															.
Alig confidence																																																															.
Template Conservation
Template Sequence		A	Y	F	I	G	V	L	D	I	Y	G	F	E	I	F	K	V	N	S	F	E	Q	L	C	I	N	Y	T	N	E	K	L	Q	Q	F	F	N	H	H	M	F	K	L	E	Q	E	E	Y	L	K	E	K	I	N	W	T	F	I	D	F	G	L	D	S	Q	A	T	I	D	L	I	D	G	R	Q	P	P	G	I	L
Template Known Secondary structure		S															S	S																																	T	T	T								G	G	G	G	G										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.		.	.	.	510	.	.	.	.					.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																												.									.	.	.	.
Query SS confidence																												.									.	.	.	.
Query Sequence		A	A	M	N	D	S	I	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	.	L	F	N	S	N	P	Y	F	.	.	.	.	E	L	R	A	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	N	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	I	E	L	I	G	T
Query Conservation																												.									.	.	.	.
Alig confidence											.	.	.	.														.									.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		A	L	L	D	E	Q	S	V	F	.	.	.	.	P	N	A	T	D	N	T	L	I	T	K	L	H	S	H	F	S	K	K	N	A	K	Y	E	E	P	R	F	S	K	T	E	F	G	V	T	H	Y	A	G	Q	V	M	Y	E	I	Q	D	W	L	E	K	N	K	D	P	L	Q	Q	D	L	E	L	C	F	K	D
Template Known Secondary structure									S	S	.	.	.	.	S	S															T	T	T	S	T	T					S	S		S	S							T	T								T	T																			T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		527	.	.	530	.	.	.	.	.					.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
		556	.	.	.	560	.	.	.	.	.	.	.				.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		T	T	N	T	F	L	S	T	I	F	P	D	.	.	.	D	V	D	K	D	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	E	L	V	E	T	L	S	K	A	E	P	S	Y	I	R	T	I	K	P	N	Q	T	K	S	P	N	D	Y	D	D	H	Q	V	L	H	Q	V	K	Y	L	G	L	Q
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		S	S	D	N	V	V	T	K	L	F	N	D	P	N	I	A	S	R	A	K	K	G	A	N	F	I	T	V	A	A	Q	Y	K	E	Q	L	A	S	L	M	A	T	L	E	T	T	N	P	H	F	V	R	C	I	I	P	N	N	K	Q	L	P	A	K	L	E	D	K	V	V	L	D	Q	L	R	C	N	G	V	L
Template Known Secondary structure			S	S	T	T																	T	T																						T	S										S		S	S			S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	V	R	I	R	R	A	G	F	A	Y	R	Q	T	F	E	K	F	V	E	R	F	Y	L	L	S	P	D	C	S	Y	A	G	D	Y	T	W	D	G	D	T	L	E	A	V	K	L	I	L	R	D	A	M	I	P	E	K	E	F	Q	L	G	V	T	S	V	F	I	K	T	P	E	S	L	F	A	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		E	G	I	R	I	T	R	K	G	F	P	N	R	I	I	Y	A	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	F	G	I	T	K	I	F	F	R	A	.	G	Q	L	A	R	I
Template Known Secondary structure							T	T	S	S							S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S						T	.	T	T	T	T		.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.																																									.	.	.	.	.	.	.	.	710	.	.	.		.	.	.	.	.	.