Job Description P36006 Confidence 100.00% Date Mon Jul 2 19:17:52 BST 2012 Rank 12 Aligned Residues 698 % Identity 37% Template c1oe9A_ PDB info PDB header:atpase/myosin Chain: A: PDB Molecule:myosin va; PDBTitle: crystal structure of myosin v motor with essential light2 chain - nucleotide-free Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																									.																																				.
Query SS confidence																									.																																				.
Query Sequence		V	I	K	K	G	A	R	R	K	D	V	K	E	P	K	K	R	S	A	K	I	K	K	.	A	T	F	D	A	N	K	K	K	E	V	G	I	S	D	L	T	L	L	S	K	I	S	D	E	S	I	N	E	N	L	K	K	R	F	.	K	N	G	I	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R
Query Conservation																									.																																				.
Alig confidence																									.																																				.
Template Conservation
Template Sequence		L	L	K	D	Y	K	P	G	D	K	V	L	Q	L	R	L	D	L	E	Y	C	L	K	E	L	P	P	L	R	N	P	D	I	L	V	G	E	N	D	L	T	A	L	S	Y	L	H	E	P	A	V	L	H	N	L	K	V	R	F	I	D	S	K	L	I	Y	T	Y	C	G	I	V	L	V	A	I	N	P	Y	E
Template Known Secondary structure			S	S				T	T		S																		B				G	G	G	T	T		S	B	G	G	G		S	S		S															S								T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	G	I	Y	T	N	A	V	L	E	S	Y	K	G	K	N	R	L	E	V	P	P	H	V	F	A	I	A	E	S	M	Y	Y	N	L	K	S	Y	N	E	N	Q	C	V	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	A	A	A	S	N	S	H	S	E	S	I	G	K	I
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.
Template Sequence		Q	L	P	I	Y	G	E	D	I	I	N	A	Y	S	G	Q	N	M	G	D	M	D	P	H	I	F	A	V	A	E	E	A	Y	K	Q	M	A	R	D	E	R	N	Q	S	I	I	V	S	G	E	S	G	A	G	K	T	V	S	A	K	Y	A	M	R	Y	F	A	T	V	S	N	.	.	.	.	.	.	.	.	V
Template Known Secondary structure				S		S	S								T	T			T	T	T	S																			T									S		T	T	S	S																		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.									.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	V	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	I	K	F	N	S	Q	F	E	P	C	A	G	N	I	T	N	Y	L	L	E	K	Q	R	V	V	G	Q	I	K	N	E	R	N	F	H	I	F	Y	Q	F	T	K	G	A	S	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	K	V	L	A	S	N	P	I	M	E	S	I	G	N	A	K	T	T	R	N	D	N	S	S	R	F	G	K	Y	I	E	I	G	F	D	K	R	Y	R	I	I	G	A	N	M	R	T	Y	L	L	E	K	S	R	V	V	F	Q	A	E	E	E	R	N	Y	H	I	F	Y	Q	L	C	A	S	A	A	L	P
Template Known Secondary structure								T													T	T							S										T	T	S														G	G	G	G	T				T	T			S	B									T	T	T	S	G
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		Y	K	Q	M	F	G	V	Q	M	P	E	Q	Y	I	Y	T	A	A	A	G	C	T	T	A	D	T	I	D	D	V	K	D	Y	E	G	T	L	E	A	M	R	T	I	G	L	V	Q	E	E	Q	D	Q	I	F	R	M	L	A	A	I	L	W	I	G	N	I	S	F	I	E	N	E	E	G	N	A	Q	.	V	G
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		E	F	K	T	L	R	L	G	N	A	N	Y	F	H	Y	T	K	Q	G	G	S	P	V	I	D	G	I	D	D	A	K	E	M	V	N	T	R	Q	A	C	T	L	L	G	I	S	D	S	Y	Q	M	G	I	F	R	I	L	A	G	I	L	H	L	G	N	V	E	F	A	S	R	D	S	D	S	C	A	I	P	P
Template Known Secondary structure		G	G	G	G	G					G	G	G	S					T	T	S					T	T																	T	T																												T	T	T						T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	S	V	T	D	F	V	A	Y	L	L	Q	V	D	A	S	L	L	V	K	C	L	V	E	R	I	M	Q	T	S	H	G	M	K	R	G	S	V	Y	H	V	P	L	N	P	V	Q	A	T	A	V	R	D	A	L	A	K	A	I	Y	N	N	L	F	D	W	I	V	D	R	V	N	V	S	L	Q	A	F	P
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		K	H	D	P	L	T	I	F	C	D	L	M	G	V	D	Y	E	E	M	A	H	W	L	C	H	R	K	L	.	.	.	.	.	.	.	.	.	A	T	Y	I	K	P	I	S	K	L	H	A	I	N	A	R	D	A	L	A	K	H	I	Y	A	N	L	F	N	W	I	V	D	H	V	N	K	A	L	H	S	T	V
Template Known Secondary structure		T												T										T	S					.	.	.	.	.	.	.	.	.																																										S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380										.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	D	K	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	H	N	S	F	E	Q	I	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	Q	L	T	L	K	A	E	Q	E	T	Y	E	R	E	K	I	K	W	T	P	I	K	Y	F	D	N	K	V	V	C	D	L	I	E	A	K	N	P	P	G	I
Query Conservation
Alig confidence																																																											.	.	.	.															.	.
Template Conservation																																																											.	.	.	.															.	.
Template Sequence		K	Q	H	S	F	I	G	V	L	D	I	Y	G	F	E	T	F	E	I	N	S	F	E	Q	F	C	I	N	Y	A	N	E	K	L	Q	Q	Q	F	N	M	H	V	F	K	L	E	Q	E	E	Y	M	K	E	Q	I	P	D	.	.	.	.	F	Y	D	N	Q	P	C	I	N	L	I	E	A	K	.	.	M	G	V
Template Known Secondary structure																			S	S	B																																	T	T				.	.	.	.													S	T	.	.	T	S
Template Predicted Secondary structure																																																											.	.	.	.															.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.					.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.		.	.	.	510	.	.	.	.					.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																													.									.	.	.	.
Query SS confidence																													.									.	.	.	.
Query Sequence		L	A	A	M	N	D	S	I	A	T	A	H	A	D	S	N	A	A	D	Q	A	F	A	Q	R	L	N	.	L	F	N	S	N	P	Y	F	.	.	.	.	E	L	R	A	N	K	F	V	I	K	H	Y	A	G	D	V	T	Y	D	I	N	G	I	T	D	K	N	K	D	Q	L	Q	K	D	L	I	E	L	I	G
Query Conservation																													.									.	.	.	.
Alig confidence												.	.	.	.														.									.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		L	D	L	L	D	E	E	C	K	M	.	.	.	.	P	K	G	S	D	D	T	W	A	Q	K	L	Y	N	T	H	L	N	K	C	A	L	F	E	K	P	R	L	S	N	K	A	F	I	I	K	H	F	A	D	K	V	E	Y	Q	C	E	G	F	L	E	K	N	K	D	T	V	Y	E	E	Q	I	K	V	L	K
Template Known Secondary structure										T	S	.	.	.	.	T	T															T	T	T		T	T					T	T		S	S							S	S	S							T	T						B
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.					.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		555	.	.	.		.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		T	T	T	N	.	T	F	L	S	T	I	F	P	D	D	V	D	K	D	S	K	R	R	P	P	T	A	G	D	K	I	I	K	S	A	N	E	L	V	E	T	L	S	K	A	E	P	S	Y	I	R	T	I	K	P	N	Q	T	K	S	P	N	D	Y	D	D	H	Q	V	L	H	Q	V	K	Y	L	G	L	Q	E
Query Conservation						.
Alig confidence						.								.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	K	K	F	K	L	L	P	E	L	F	.	.	.	.	.	.	.	.	.	.	H	K	K	T	V	G	H	Q	F	R	N	S	L	H	L	L	M	E	T	L	N	A	T	T	P	H	Y	V	R	C	I	K	P	N	D	F	K	F	P	F	T	F	D	E	K	R	A	V	Q	Q	L	R	A	C	G	V	L	E
Template Known Secondary structure		T			S		S							.	.	.	.	.	.	.	.	.	.				B																		T	S												T	T			T	T														T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.											.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	R	I	R	R	A	G	F	A	Y	R	Q	T	F	E	K	F	V	E	R	F	Y	L	L	S	P	D	C	S	Y	A	G	D	Y	T	W	D	G	D	T	L	E	A	V	K	L	I	L	R	D	A	M	I	P	E	K	E	F	Q	L	G	V	T	S	V	F	I	K	T	P	E	S	L	F	A	L	E	D	M
Query Conservation
Alig confidence																																			.	.	.	.	.	.																																.
Template Conservation																																			.	.	.	.	.	.																																.
Template Sequence		T	I	R	I	S	A	A	G	F	P	S	R	W	T	Y	Q	E	F	F	S	R	Y	R	V	L	M	K	Q	K	D	V	L	S	.	.	.	.	.	.	D	R	K	Q	T	C	K	N	V	L	E	K	L	I	L	D	K	D	K	Y	Q	F	G	K	T	K	I	F	F	R	A	.	G	Q	V	A	Y	L	E	K	I
Template Known Secondary structure									S															G	G	G	S		G	G	G			S	.	.	.	.	.	.	S													S			G	G	G					S	S						T	.	T
Template Predicted Secondary structure																																			.	.	.	.	.	.																																.
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.							.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.		.	.	.	.	.	.	760	.	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	K	Y	W	Y	N	M	A	A	R	I	Q	R	A	W	R	R	F	L	Q	R	R	I	D	A	A	I	K	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	D	K	L	R	A	A	C	I	R	I	Q	K	T	I	R	G	W	L	M	R	K	K	Y	M	R	M	R	R	G
Template Known Secondary structure																																T
Template Predicted Secondary structure
Template SS confidence
		763	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.