 |
| Job Description | P00045 | | Confidence | 99.31% | Date | Mon Jul 2 19:10:25 BST 2012 |
| Rank | 79 | Aligned Residues | 86 |
| % Identity | 24% | Template | d1m70a2 |
| SCOP info | Cytochrome c
| Cytochrome c
| Two-domain cytochrome c
|
| Resolution | 1.25 |
|
 |
|   |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | F | K | P | G | S | A | K | K | G | A | T | L | F | K | T | R | . |
. |
. |
. |
. |
. |
. |
. |
C | Q | Q | C | H | T | I | E | E | G | G | P | N | K | V | G | P | N | L | H | G | I | F | G | R | H | S | G | Q | V | K | G | Y | S | Y | T | D | A | N | I | N | K | N | V | K | W | D | E | D | S | M | S | E | Y | L |
| Query Conservation |   |
|   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . |
|   |   |
|
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
| Template Sequence |   |
Y | A | D | P | A | L | A | K | Q | G | E | K | L | F | R | G | G | K | L | D | Q | G | M | P | A | C | T | G | C | H | A | P | N | G | V | G | N | D | L | A | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | P | K | L | G | G | Q | H | A | A | Y | T | A | K | Q | L | T | D | F | R |
| Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| B | G | G | G | T | B |
|
| S |  |  |  |  |
| T | T | S |
|
| B | G | G | G | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | B |
|
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
|   |
|   |   |
79 | 80 | . | |
. | . | . | . | . | . | . | . | 90 | . | . | . | |
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
| Predicted Secondary structure |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
T | N | P | . |
K | K | Y | I | P | G | T | K | M | A | F | A | . |
G | L | K | K | E | K | D | R | N | D | L | I | T | Y | M | T | K | A |
| Query Conservation |   |
  |   |
| . |   |   |   |   |   |
|   |   |
|
|   |   | . |   |   |
|
|   |   |
|   |   |
|
|
|
|
|
|   |
|
|
| Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |
|   |
|
|
|   |
|
|
| Template Sequence |   |
E | G | N | R | T | N | D | G | D | T | M | I | M | R | G | V | A | A | K | L | S | N | K | D | I | E | A | L | S | S | Y | I | Q | G | L |
| Template Known Secondary structure |   |
 | T | S |
|
| T | T | T | T | T |
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
155 | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|