Job Description Q06449 Confidence 99.59% Date Mon Jul 2 19:31:53 BST 2012 Rank 194 Aligned Residues 56 % Identity 32% Template c3rebD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain Resolution 3.45 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		Y	V	E	A	L	Y	Q	F	D	P	Q	Q	D	G	D	L	G	L	K	P	G	D	K	V	Q	L	L	E	K	L	S	P	E	W	Y	K	G	S	.	C	N	G	R	T	G	I	F	P	A	N	Y	V	K	P	A	F	S
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		I	V	V	A	L	Y	D	Y	V	S	W	S	P	D	D	L	S	F	Q	K	G	D	Q	M	V	V	L	E	E	S	G	E	W	W	K	A	R	S	L	A	T	R	K	E	G	Y	I	P	S	N	Y	V	A	R	V	D	S
Template Known Secondary structure						S	S		B			S	S	T	T	B			B		T	T									S	S	S							T	T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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