Email l.a.kelley@imperial.ac.uk Description O13539 Date Mon Jul 2 19:10:10 BST 2012 Unique Job ID 204bab2d0bd130c3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nfoA_ 59.1 14 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 2 d1eo0a_ 39.7 15 Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 c2is9A_ 35.1 14 PDB header:transcription Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: structure of yeast dcn-1 4 c2eaoA_ 30.7 23 PDB header:signaling protein, transferase Chain: A: PDB Molecule:ephrin type-b receptor 1; PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112) 5 d2ebfx2 27.4 7 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 6 d2dk4a1 24.7 26 Fold:LEM/SAP HeH motif Superfamily:PRP4-like Family:PRP4-like 7 d1hjra_ 22.8 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 8 c1n0fF_ 22.5 20 PDB header:biosynthetic protein Chain: F: PDB Molecule:protein mraz; PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif 9 c1lw3A_ 22.1 24 PDB header:hydrolase Chain: A: PDB Molecule:myotubularin-related protein 2; PDBTitle: crystal structure of myotubularin-related protein 22 complexed with phosphate 10 c3teqB_ 21.0 32 PDB header:signaling protein Chain: B: PDB Molecule:stromal interaction molecule 1; PDBTitle: crystal structure of soar domain 11 c3qf7D_ 20.7 41 PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair 12 c3gbgA_ 19.9 8 PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 13 c2ltaA_ 19.6 40 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed protein; PDBTitle: solution nmr structure of de novo designed protein, rossmann 3x1 fold,2 northeast structural genomics consortium target or157 14 c2c5iT_ 18.7 21 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 15 d1zsqa2 17.7 24 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Myotubularin-like phosphatases 16 c1wq6A_ 17.4 22 PDB header:oncoprotein Chain: A: PDB Molecule:aml1-eto; PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity 17 c1zsqA_ 16.5 24 PDB header:hydrolase Chain: A: PDB Molecule:myotubularin-related protein 2; PDBTitle: crystal structure of mtmr2 in complex with2 phosphatidylinositol 3-phosphate 18 d1n0ea_ 16.4 20 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Hypothetical protein MraZ 19 c3t4aG_ 16.1 50 PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution 20 c3terA_ 15.5 25 PDB header:metal binding protein Chain: A: PDB Molecule:mammalian stromal interaction molecule-1; PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans 21 c2yf0A_ not modelled 15.3 24 PDB header:hydrolase Chain: A: PDB Molecule:myotubularin-related protein 6; PDBTitle: human myotubularin related protein 6 (mtmr6) 22 d1d4oa_ not modelled 14.7 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 23 c2qffA_ not modelled 14.7 38 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of staphylococcal complement inhibitor 24 c3ha4C_ not modelled 14.2 19 PDB header:unknown function Chain: C: PDB Molecule:mix1; PDBTitle: crystal structure of the type one membrane protein mix1 from2 leishmania 25 c1pt9B_ not modelled 14.1 18 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 26 d1pnoa_ not modelled 13.9 22 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 27 c2bruC_ not modelled 13.0 27 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 28 c3fmyA_ not modelled 12.1 9 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 29 c3f02A_ not modelled 11.9 12 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 30 d1ft8e_ not modelled 11.7 8 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 31 c3kkaD_ not modelled 11.5 21 PDB header:transferase Chain: D: PDB Molecule:ephrin type-a receptor 2; PDBTitle: co-crystal structure of the sam domains of epha1 and epha2 32 c1i25A_ not modelled 11.4 40 PDB header:toxin Chain: A: PDB Molecule:huwentoxin-ii; PDBTitle: three dimensional solution structure of huwentoxin-ii by 2d2 1h-nmr 33 d1i25a_ not modelled 11.4 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 34 c2yxhB_ not modelled 11.0 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 35 d2icta1 not modelled 10.9 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 36 d1gs9a_ not modelled 10.9 13 Fold:Four-helical up-and-down bundle Superfamily:Apolipoprotein Family:Apolipoprotein 37 d1idra_ not modelled 10.7 5 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 38 c2jqqA_ not modelled 10.5 26 PDB header:protein transport Chain: A: PDB Molecule:conserved oligomeric golgi complex subunit 2; PDBTitle: solution structure of saccharomyces cerevisiae conserved2 oligomeric golgi subunit 2 protein (cog2p) 39 c2e8nA_ not modelled 10.3 22 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 40 d1wmhb_ not modelled 10.1 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 41 c2v4hA_ not modelled 10.0 29 PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex 42 d1z9ha1 not modelled 9.4 15 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 43 c2q0oC_ not modelled 9.2 25 PDB header:transcription Chain: C: PDB Molecule:probable transcriptional repressor tram; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 44 c2fjrB_ not modelled 9.0 10 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 45 c3cecA_ not modelled 9.0 12 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 46 c1b0xA_ not modelled 9.0 17 PDB header:transferase Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase); PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization. 47 d1b0xa_ not modelled 9.0 17 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 48 c2ktrA_ not modelled 8.9 11 PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs 49 d1knxa1 not modelled 8.8 14 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 50 c2qyaA_ not modelled 8.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of an uncharacterized conserved protein2 from methanopyrus kandleri 51 c2riwA_ not modelled 8.7 13 PDB header:signaling protein Chain: A: PDB Molecule:thyroxine-binding globulin; PDBTitle: the reactive loop cleaved human thyroxine binding globulin complexed2 with thyroxine 52 c2zvnF_ not modelled 8.6 29 PDB header:signaling protein/transcription Chain: F: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group 53 d1pzra_ not modelled 8.5 22 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 54 c2ebyA_ not modelled 8.2 18 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli 55 c2hx1D_ not modelled 8.0 28 PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution 56 c3vejB_ not modelled 7.9 33 PDB header:protein binding Chain: B: PDB Molecule:ubiquitin-like protein mdy2; PDBTitle: crystal structure of the get5 carboxyl domain from s. cerevisiae 57 d1ioka2 not modelled 7.7 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 58 c1ow5A_ not modelled 7.7 19 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase ste11; PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain 59 d1ow5a_ not modelled 7.7 19 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 60 c2lnzA_ not modelled 7.6 33 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin-like protein mdy2; PDBTitle: solution structure of the get5 carboxyl domain from s. cerevisiae 61 c2q2kA_ not modelled 7.6 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 62 d2nr5a1 not modelled 7.6 17 Fold:Ferritin-like Superfamily:SO2669-like Family:SO2669-like 63 c3mlfC_ not modelled 7.5 16 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 64 d1ydxa1 not modelled 7.4 12 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 65 c2h4bC_ not modelled 7.4 20 PDB header:de novo protein Chain: C: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 66 c2h3sB_ not modelled 7.4 20 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: cis-azobenzene-avian pancreatic polypeptide bound to dpc2 micelles 67 c2h4bD_ not modelled 7.4 20 PDB header:de novo protein Chain: D: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 68 c3vp8B_ not modelled 7.4 14 PDB header:transcription Chain: B: PDB Molecule:general transcriptional corepressor tup1; PDBTitle: crystal structure of the n-terminal domain of the yeast general2 corepressor tup1p 69 d1b4fa_ not modelled 7.4 25 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 70 c3mtuE_ not modelled 7.3 30 PDB header:contractile protein Chain: E: PDB Molecule:head morphogenesis protein, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 71 d1whua_ not modelled 7.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 72 c3n8uB_ not modelled 7.0 16 PDB header:hydrolase Chain: B: PDB Molecule:imelysin peptidase; PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution 73 c2ns6A_ not modelled 7.0 24 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 74 d1ft8a2 not modelled 6.9 7 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 75 c2h3tB_ not modelled 6.8 20 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc2 micelles 76 c3odsA_ not modelled 6.8 28 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the k185a mutant of the n-terminal domain of2 human symplekin 77 d1ykhb1 not modelled 6.8 17 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 78 d1rkua_ not modelled 6.7 17 Fold:HAD-like Superfamily:HAD-like Family:Homoserine kinase ThrH 79 c2bf9A_ not modelled 6.7 20 PDB header:hormone Chain: A: PDB Molecule:pancreatic hormone; PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution. 80 c2ppxA_ not modelled 6.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 81 d2ppxa1 not modelled 6.7 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 82 d2hbka1 not modelled 6.5 29 Fold:SAM domain-like Superfamily:HRDC-like Family:EXOSC10 HRDC domain-like 83 c2kg5A_ not modelled 6.5 12 PDB header:signaling protein Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph PDBTitle: nmr solution structure of arap3-sam 84 c3o2qD_ not modelled 6.4 28 PDB header:hydrolase Chain: D: PDB Molecule:symplekin; PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 85 d1rkqa_ not modelled 6.4 24 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 86 c1vdiA_ not modelled 6.4 19 PDB header:contractile protein Chain: A: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: solution structure of actin-binding domain of troponin in2 ca2+-free state 87 c2ef8A_ not modelled 6.3 19 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is 88 d1r9da_ not modelled 6.1 25 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 89 c1tz5A_ not modelled 6.1 30 PDB header:hormone/growth factor Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y; PDBTitle: [pnpy19-23]-hpp bound to dpc micelles 90 c3l9aX_ not modelled 6.1 30 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: structure of the c-terminal domain from a streptococcus2 mutans hypothetical 91 c3aq8A_ not modelled 6.0 8 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 92 c3odrA_ not modelled 6.0 28 PDB header:protein binding Chain: A: PDB Molecule:symplekin; PDBTitle: crystal structure of the n-terminal domain of human symplekin 93 c2d7cD_ not modelled 5.9 24 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 94 d1h9aa1 not modelled 5.9 40 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 95 c3h8mB_ not modelled 5.8 18 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 7; PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7) 96 d2grrb1 not modelled 5.8 9 Fold:alpha-alpha superhelix Superfamily:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain Family:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain 97 c3u88B_ not modelled 5.7 16 PDB header:transcription Chain: B: PDB Molecule:menin; PDBTitle: crystal structure of human menin in complex with mll1 and ledgf 98 c3nkuA_ not modelled 5.7 40 PDB header:protein transport Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila 99 d2hwna1 not modelled 5.7 17 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit