 |
| Job Description | O13539 | | Confidence | 11.47% | Date | Mon Jul 2 19:10:10 BST 2012 |
| Rank | 31 | Aligned Residues | 61 |
| % Identity | 21% | Template | c3kkaD_ |
| PDB info |
PDB header:transferase | Chain: D: PDB Molecule:ephrin type-a receptor 2; |
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
|
| Resolution | 2.40 Å |
|
 |
|   |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | |
. | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | K | N | Y | L | D | Q | I | K | M | A | R | A | K | . |
F | G | L | E | N | K | Y | S | L | K | E | R | L | S | T | L | T | K | E | L | N | H | W | R | K | E | W | D | D | I | E | M | L | M | F | G | D | D | A | H | S | M | K | K | M | I | Q | K | I | D | S | L | K | S | E | I | N |
| Query Conservation |   |
|   |   |
|
|
|   |
|
|
|
|
|
|
| . |
|   |
|
|
|
|
|   |
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|
|   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |
|
|   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |   |
| . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|   |   |   |
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |
|
| Template Sequence |   |
V | S | E | W | L | E | S | I | K | M | Q | Q | Y | T | E | H | F | M | A | A | G | Y | T | A | I | E | K | V | V | Q | M | T | N | D | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | K | R | I | G | V | R | L | P | G | H | Q | K | R | I | A | Y | S | L | L | G | L | K | D | Q | V | N |
| Template Known Secondary structure |   |
 |  |  |  |  |  | T | T | T |
| G | G | G |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  | T | T |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
909 | 910 | . | . | . | . | . | . | . | . | . | 920 | . | . | . | . | . | . | . | . | . | 930 | . | . | . | . | . | . | . | . | . | 940 | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|