Job Description O13539 Confidence 9.25% Date Mon Jul 2 19:10:10 BST 2012 Rank 43 Aligned Residues 48 % Identity 25% Template c2q0oC_ PDB info PDB header:transcription Chain: C: PDB Molecule:probable transcriptional repressor tram; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	N	R	D	T	L	R	Y	I	N	L	L	K	R	L	S	V	D	L	A	K	Q	V	E	V	S	D	P	S	V	T	V	Y	E	M	D	K	W	V	P	S	E	K	L	Q	G	I	L	E	Q	Y	C	A	P	D	T	D	I	R	G	V	D	A	Q	I	K	N	Y	L	D	Q	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.			.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.			.
Template Sequence		A	V	Y	E	E	W	L	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	D	P	S	I	S	G	.	.	.	.	.	.	.	.	P	V	.	L	Q	T	L	Q	D	E	Y	V	A	R	Q	K	R	S	E	A	Q	Q	E	E	L	S	D	I	L	D	A	L
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T	T	S			.	.	.	.	.	.	.	.			.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.			.
Template SS confidence
		48	.	50	.	.	.	.	.	.																	.	.	.	60	.	.	.	.									.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions