Job Description O13539 Confidence 59.14% Date Mon Jul 2 19:10:10 BST 2012 Rank 1 Aligned Residues 113 % Identity 14% Template c1nfoA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) Resolution 2.00 Å

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		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.										.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.
Query Sequence		P	K	S	I	S	E	Y	Y	S	T	F	E	H	L	N	R	D	T	L	R	Y	I	N	L	L	K	R	L	S	V	D	L	A	K	Q	V	E	V	S	D	P	S	V	T	V	Y	E	M	D	K	W	V	P	S	E	K	L	Q	G	I	L	E	Q	Y	C	A	P	.	.	.	.	.	.	.	.	.	D	T	D	I
Query Conservation																																																																					.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	R	F	W	D	Y	L	R	W	V	Q	T	L	S	E	Q	V	Q	E	E	L	L	.	.	.	.	.	S	S	Q	V	T	Q	E	L	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	D	E	T	M	K	E	L	K	A	Y	K	S	E	L	E	E	Q	R	L	S	K	E	L
Template Known Secondary structure																									.	.	.	.	.	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T
Template Predicted Secondary structure																									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.																		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	V	D	A	Q	I	K	N	Y	L	D	Q	I	K	M	A	R	A	K	F	G	L	E	N	K	Y	S	L	K	E	R	L	S	T	L	T	K	E	L	N	H	W	R	K	E	W	D	D	I	E	M	L	M	F	G	D	D	A	H	S	M	K	K	M	I	Q	K	I	D	S	L	K	S	E	I	N	A
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	A	Q	A	R	L	G	A	D	M	E	D	V	C	G	R	L	V	Q	Y	R	G	E	V	Q	A	M	L	G	Q	S	T	E	E	L	R	V	R	L	A	S	H	L	R	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	R	L	L	R	D	A	D	A	L	Q	K	C	L	A	V
Template Known Secondary structure																													T	T	T																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.															.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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