Job Description D6VTK4 Confidence 4.71% Date Mon Jul 2 19:10:02 BST 2012 Rank 44 Aligned Residues 153 % Identity 13% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	L	T	L	I	V	M	W	M	T	S	R	S	R	K	T	P	I	F	I	I	N	Q	V	S	L	F	L	I	I	L	H	S	A	L	Y	F	K	Y	L	L	S	N	Y	S	S	V	T	Y	A	L	T	G	F	P	Q	F	I	S	R	G	D	V	H	V	Y	G	A	T	N	I	I	Q	V	L	L	V	A
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	L	L	T	T	I	G	L
Template Known Secondary structure													T	T		S	S	S					G	G	G																T	T			B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.																							.	930	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		S	I	E	T	S	L	V	F	Q	I	K	V	I	F	T	G	D	N	F	K	R	I	G	L	M	L	T	S	I	S	F	T	L	G	I	A	T	V	T	M	Y	F	V	S	A	V	K	G	M	I	V	T	Y	N	D	V	S	A	T	Q	D	K	Y	F	N	A	S	T	I	.	L	L	A	S	S	I	N	F	M	S
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L
Template Known Secondary structure																	T	T	S	S				T	T									T	T																				T	T		S	S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		938	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	L	V	V	K	L	I	L	A	I	R	S	R	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F
Template Known Secondary structure		T	T	S	S	S	S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		1018	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions