Job Description D6VTK4 Confidence 4.57% Date Mon Jul 2 19:10:02 BST 2012 Rank 46 Aligned Residues 196 % Identity 8% Template c3oe6A_ PDB info PDB header:signaling protein, hydrolase Chain: A: PDB Molecule:c-x-c chemokine receptor type 4, lysozyme chimera; PDBTitle: crystal structure of the cxcr4 chemokine receptor in complex with a2 small molecule antagonist it1t in i222 spacegroup Resolution 3.20 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		S	T	V	T	Q	A	I	M	F	G	V	R	C	G	A	A	A	L	.	.	.	T	L	I	V	M	W	M	T	S	R	S	R	K	T	P	I	F	I	I	N	Q	V	S	L	F	L	I	I	L	H	S	A	L	Y	F	K	Y	L	L	S	N	Y	S	S	V	T	Y	A	L	T	G	F	P	Q	F	I	S	R	G
Query Conservation																				.	.	.
Alig confidence																				.	.	.																	.	.	.
Template Conservation																																							.	.	.
Template Sequence		N	K	I	F	L	P	T	I	Y	S	I	I	F	L	T	G	I	V	G	N	G	L	V	I	L	V	M	G	Y	Q	K	K	L	R	S	M	T	.	.	.	D	K	Y	R	L	H	L	S	V	A	D	L	L	F	V	I	T	L	P	F	W	A	V	D	A	V	A	N	W	Y	F	G	N	F	L	C	K	A	V	H
Template Known Secondary structure																																S	S	S					.	.	.																T	T										T			T	T
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		D	V	H	V	Y	G	A	T	N	I	I	Q	V	L	L	V	A	S	I	E	T	S	L	V	F	Q	I	K	V	I	F	T	G	D	N	F	K	R	I	G	L	M	L	T	S	I	S	F	T	L	G	I	A	T	V	T	M	Y	F	V	S	A	.	.	V	K	G	M	I	V	T	Y	N	D	V	S	A	T	Q	D
Query Conservation																																																																.	.
Alig confidence																																																																.	.
Template Conservation
Template Sequence		V	I	Y	T	V	N	L	Y	S	S	V	W	I	L	A	F	I	S	L	D	R	Y	L	A	I	V	H	A	T	N	S	Q	R	P	R	K	L	L	A	E	K	V	V	Y	V	G	V	W	I	P	A	L	L	L	T	I	P	D	F	I	F	A	N	V	S	E	A	D	D	R	Y	I	C	D	R	F	Y	P	N	D
Template Known Secondary structure																												S		T	T											T					T	T							T	T													T	T									S	S	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	F	N	A	S	T	I	L	L	A	S	S	I	N	F	M	S	F	V	L	V	V	K	L	I	L	A	I	R	S	R	R	F	L	G	L	K	Q	F	D	S	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	V	V	V	F	Q	F	Q	H	I	M	V	G	L	I	L	P	G	I	V	I	L	S	C	Y	C	I	I	I	S	K	L	D	E	G	L	R	L	K	I	Y	K	D
Template Known Secondary structure																T																	T							S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions