Job Description D6VTK4 Confidence 4.53% Date Mon Jul 2 19:10:02 BST 2012 Rank 47 Aligned Residues 194 % Identity 8% Template c2ksaA_ PDB info PDB header:neuropeptide receptor/neuropeptide Chain: A: PDB Molecule:substance-p receptor; PDBTitle: substance p in dmpc/chaps isotropic q=0.25 bicelles as a ligand for2 nk1r Resolution UNK

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		S	T	V	T	Q	A	I	M	F	G	V	R	C	G	A	A	A	.	.	.	L	T	L	I	V	M	W	M	T	S	R	S	R	K	T	P	I	F	I	I	N	Q	V	S	L	F	L	I	I	L	H	S	A	L	Y	F	K	Y	L	L	S	N	Y	S	S	V	T	Y	A	L	T	G	F	P	Q	F	I	S	R	G
Query Conservation																			.	.	.
Alig confidence																			.	.	.
Template Conservation
Template Sequence		Q	I	V	L	W	A	A	A	Y	T	V	I	V	V	T	S	V	V	G	N	V	V	V	M	W	I	I	L	A	H	K	R	M	R	T	V	T	N	Y	F	L	V	N	L	A	F	A	E	A	S	M	A	A	F	N	T	V	V	N	F	T	Y	A	V	H	N	E	W	Y	Y	G	L	F	Y	C	K	F	H	N	F
Template Known Secondary structure																																T	T																						T												T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	H	V	Y	G	A	T	N	I	I	Q	V	L	L	V	A	S	I	E	T	S	L	V	F	Q	I	K	V	I	F	T	G	D	N	F	K	R	I	G	L	M	L	T	S	I	S	F	T	L	G	I	A	T	V	T	M	Y	F	V	S	A	V	K	G	M	I	V	T	Y	N	D	V	S	A	T	Q	D	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	I	A	A	V	F	A	S	I	Y	S	M	T	A	V	A	F	D	R	Y	M	A	I	I	H	P	L	Q	P	R	L	S	A	T	A	T	K	V	V	I	C	V	I	W	V	L	A	L	L	L	A	F	P	Q	G	Y	Y	S	T	T	E	T	M	P	S	R	V	V	C	M	I	E	W	P	E	H	P	N	K
Template Known Secondary structure																														T	T	S																						T	T	T	T	T	T	S				B		T	T		S	S	B					S				T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	A	S	T	I	L	L	A	S	S	I	N	F	M	S	F	V	L	V	V	K	L	I	L	A	I	R	S	R	R	F	L	G	L	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	E	K	V	Y	H	I	C	V	T	V	L	I	Y	F	L	P	L	L	V	I	G	Y	A	Y	T	V	V	G	I	T	L	W	A	S	E
Template Known Secondary structure		T	T													T																	S	S		S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions