Job Description D6VTK4 Confidence 4.14% Date Mon Jul 2 19:10:02 BST 2012 Rank 64 Aligned Residues 44 % Identity 18% Template c1nfiC_ PDB info PDB header:complex (transcription reg/ank repeat) Chain: C: PDB Molecule:nf-kappa-b p65; PDBTitle: i-kappa-b-alpha/nf-kappa-b complex Resolution 2.70 Å

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Show / Hide Conservation and Alignment quality

		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	S	E	T	A	D	D	I	E	K	N	Q	F	Y	Q	L	P	T	P	T	S	S	K	N	T	R	I	G	P	F	A	D	A	S	Y	K	E	G	E	V	E	P	V	D	M	Y	T	P	D	T	A	A	D	E	E	A	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	A	D	P	S	L	Q	A	P	V	R	V	S	M	Q	L	R	R	P	S	D	R	E	L	S	E	P	M	E	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	P	D	T	D	D	R	H	R	I	E
Template Known Secondary structure				S		T	T		S	S											T	T	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.															.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions