Job Description O13556 Confidence 5.12% Date Mon Jul 2 19:10:14 BST 2012 Rank 32 Aligned Residues 37 % Identity 16% Template c2zkqc_ PDB info PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	K	V	V	K	F	R	T	G	A	M	D	R	K	R	S	F	E	K	V	V	I	S	V	M	V	G	K	N	V	K	K	F	L	T	F
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		G	C	E	V	V	V	S	G	K	L	R	G	.	Q	R	A	K	S	M	K	F	V	D	G	L	M	I	H	S	G	D	P	V	N	Y	Y	V	D
Template Known Secondary structure									S	S	G	G	G	.	S	S				B						S	S					S	S	T	T
Template Predicted Secondary structure														.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions