Phyre 2 Results for O75012

Email | l.a.kelley@imperial.ac.uk
Description | O75012
Date | Mon Jul 2 19:10:23 BST 2012
Unique Job ID | 1312447d8ae6db08

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1ei0A_ |
|  | 90.9 | 22 | PDB header:cell cycle Chain: A: PDB Molecule:p8mtcp1; PDBTitle: nmr structure of the alpha-helical hairpin of p8mtcp1
2 | d2hp8a_ |
|  | 85.9 | 24 | Fold:Cysteine alpha-hairpin motif Superfamily:Cysteine alpha-hairpin motif Family:p8-MTCP1
3 | c2k3jA_ |
|  | 78.3 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:mitochondrial intermembrane space import and PDBTitle: the solution structure of human mia40
4 | d1u97a_ |
|  | 76.8 | 23 | Fold:Cysteine alpha-hairpin motif Superfamily:Cysteine alpha-hairpin motif Family:COX17-like
5 | c2rnbA_ |
|  | 58.2 | 21 | PDB header:metal transport Chain: A: PDB Molecule:cytochrome c oxidase copper chaperone; PDBTitle: solution structure of human cu(i)cox17
6 | d2db7a1 |
|  | 44.1 | 23 | Fold:Orange domain-like Superfamily:Orange domain-like Family:Hairy Orange domain
7 | c3qp5C_ |
|  | 36.1 | 13 | PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
8 | d1yioa1 |
|  | 29.4 | 2 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
9 | c1h0mD_ |
|  | 28.5 | 6 | PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
10 | c1zljE_ |
|  | 28.2 | 14 | PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
11 | c2q0oA_ |
|  | 26.5 | 0 | PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
12 | d1ppjh_ |
|  | 24.4 | 18 | Fold:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
13 | d1fsea_ |
|  | 23.1 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
14 | d1a04a1 |
|  | 21.6 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
15 | d1l0lh_ |
|  | 20.6 | 18 | Fold:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
16 | c3sztB_ |
|  | 20.6 | 6 | PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
17 | c2jpcA_ |
|  | 19.9 | 3 | PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein
18 | d1p4wa_ |
|  | 18.2 | 7 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
19 | c3u1dA_ |
|  | 17.2 | 38 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei.
20 | c3cloC_ |
|  | 16.8 | 13 | PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
21 | c3c3wB_ |
| not modelled | 15.4 | 13 | PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
22 | c2krfB_ |
| not modelled | 14.8 | 19 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
23 | c2km4A_ |
| not modelled | 14.7 | 7 | PDB header:transcription regulator Chain: A: PDB Molecule:regulator of ty1 transposition protein 103; PDBTitle: solution structure of rtt103 ctd interacting domain
24 | c3kmpA_ |
| not modelled | 14.2 | 19 | PDB header:transcription regulator/dna Chain: A: PDB Molecule:smad1-mh1; PDBTitle: crystal structure of smad1-mh1/dna complex
25 | c3qsvD_ |
| not modelled | 14.1 | 21 | PDB header:transcription/dna Chain: D: PDB Molecule:mothers against decapentaplegic homolog 4; PDBTitle: structural basis for dna recognition by constitutive smad4 mh1 dimers
26 | c1x3uA_ |
| not modelled | 14.1 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
27 | c3ck4K_ |
| not modelled | 11.8 | 50 | PDB header:protein binding Chain: K: PDB Molecule:gcn4 leucine zipper; PDBTitle: a heterospecific leucine zipper tetramer
28 | c2of5A_ |
| not modelled | 11.4 | 11 | PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex
29 | d1l3la1 |
| not modelled | 9.6 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
30 | c1zn2A_ |
| not modelled | 9.5 | 6 | PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr
31 | c3klnC_ |
| not modelled | 9.4 | 16 | PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst
32 | c3qqmD_ |
| not modelled | 9.3 | 63 | PDB header:transferase Chain: D: PDB Molecule:mlr3007 protein; PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution
33 | c2rnjA_ |
| not modelled | 9.0 | 5 | PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain
34 | d2p4wa1 |
| not modelled | 8.6 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF1790-like
35 | c2yqfA_ |
| not modelled | 8.5 | 25 | PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1
36 | d1fada_ |
| not modelled | 8.1 | 30 | Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD
37 | d2yt9a2 |
| not modelled | 7.9 | 60 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
38 | d1r1ua_ |
| not modelled | 7.8 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators
39 | d2cazc1 |
| not modelled | 7.5 | 60 | Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS37 C-terminal domain-like
40 | d2f66c1 |
| not modelled | 7.4 | 60 | Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS37 C-terminal domain-like
41 | c1l6nA_ |
| not modelled | 6.9 | 20 | PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
42 | c3jthA_ |
| not modelled | 6.8 | 33 | PDB header:transcription Chain: A: PDB Molecule:transcription activator hlyu; PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
43 | c2zkzC_ |
| not modelled | 6.7 | 13 | PDB header:transcription Chain: C: PDB Molecule:transcriptional repressor pagr; PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
44 | c1rnlA_ |
| not modelled | 6.7 | 13 | PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl
45 | d1sg7a1 |
| not modelled | 6.6 | 30 | Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like
46 | c1sg7A_ |
| not modelled | 6.6 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab
47 | c2z5hB_ |
| not modelled | 6.5 | 36 | PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt
48 | c2jscB_ |
| not modelled | 6.5 | 33 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050; PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
49 | c2ipzD_ |
| not modelled | 6.3 | 75 | PDB header:biosynthetic protein Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: a parallel coiled-coil tetramer with offset helices
50 | c2qufB_ |
| not modelled | 6.2 | 8 | PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
51 | c1ld4E_ |
| not modelled | 6.0 | 75 | PDB header:virus Chain: E: PDB Molecule:general control protein gcn4; PDBTitle: placement of the structural proteins in sindbis virus
52 | d1r1ta_ |
| not modelled | 5.8 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators
53 | c1r22B_ |
| not modelled | 5.7 | 17 | PDB header:transcription repressor Chain: B: PDB Molecule:transcriptional repressor smtb; PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
54 | c2ahpB_ |
| not modelled | 5.6 | 75 | PDB header:de novo protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys
55 | c2ztaB_ |
| not modelled | 5.6 | 75 | PDB header:leucine zipper Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil
56 | c2ztaA_ |
| not modelled | 5.6 | 75 | PDB header:leucine zipper Chain: A: PDB Molecule:gcn4 leucine zipper; PDBTitle: x-ray structure of the gcn4 leucine zipper, a two-stranded,2 parallel coiled coil
57 | c3f6oB_ |
| not modelled | 5.6 | 17 | PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
58 | c2ahpA_ |
| not modelled | 5.5 | 75 | PDB header:de novo protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys
59 | c2g9jA_ |
| not modelled | 5.5 | 75 | PDB header:structural protein Chain: A: PDB Molecule:tropomyosin 1 alpha chain/general control protein PDBTitle: complex of tm1a(1-14)zip with tm9a(251-284): a model for the2 polymerization domain ("overlap region") of tropomyosin,3 northeast structural genomics target or9
60 | c3jrnA_ |
| not modelled | 5.5 | 13 | PDB header:plant protein Chain: A: PDB Molecule:at1g72930 protein; PDBTitle: crystal structure of tir domain from arabidopsis thaliana
61 | d1v54h_ |
| not modelled | 5.4 | 17 | Fold:Cytochrome c oxidase subunit h Superfamily:Cytochrome c oxidase subunit h Family:Cytochrome c oxidase subunit h
62 | c1d5yD_ |
| not modelled | 5.4 | 21 | PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna
63 | c1ce9A_ |
| not modelled | 5.3 | 75 | PDB header:helix capping Chain: A: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper
64 | c1ce9C_ |
| not modelled | 5.3 | 75 | PDB header:helix capping Chain: C: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper
65 | c1ce9D_ |
| not modelled | 5.3 | 75 | PDB header:helix capping Chain: D: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper
66 | c1ce9B_ |
| not modelled | 5.3 | 75 | PDB header:helix capping Chain: B: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper
67 | c3cuoB_ |
| not modelled | 5.3 | 36 | PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
68 | c1ihqA_ |
| not modelled | 5.1 | 75 | PDB header:de novo protein Chain: A: PDB Molecule:chimeric peptide glytm1bzip: tropomyosin alpha PDBTitle: glytm1bzip: a chimeric peptide model of the n-terminus of a2 rat short alpha tropomyosin with the n-terminus encoded by3 exon 1b
69 | c2xusA_ |
| not modelled | 5.0 | 38 | PDB header:protein binding Chain: A: PDB Molecule:breast cancer metastasis-suppressor 1; PDBTitle: crystal structure of the brms1 n-terminal region