Job Description O13559 Confidence 99.96% Date Mon Jul 2 19:10:15 BST 2012 Rank 42 Aligned Residues 356 % Identity 15% Template c3oiyB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima Resolution 2.35 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C
Query Conservation
Alig confidence													.	.							.												.	.																															.	.	.
Template Conservation													.	.							.												.	.																															.	.	.
Template Sequence		D	F	R	S	F	F	K	K	K	F	G	.	.	K	D	L	T	G	Y	.	Q	R	L	W	A	K	R	I	V	Q	G	.	.	K	S	F	T	M	V	A	P	T	G	V	G	K	T	T	F	G	M	M	T	A	L	W	L	A	R	K	G	K	K	.	.	.	S	A	L	V	F	P	T	V	T	L	V	K	Q	T
Template Known Secondary structure												S	.	.	S						.									T	T	T	.	.								S	S		T	T														T	T	T			.	.	.						S	S
Template Predicted Secondary structure													.	.							.												.	.																															.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		L	E	R	L	Q	K	L	A	D	E	K	V	K	I	F	G	F	Y	S	S	M	K	K	E	E	K	E	K	.	.	.	.	F	E	K	S	F	E	E	D	D	Y	H	I	L	V	F	S	T	Q	F	V	S	K	N	R	E	K	L	S	Q	K	R	F	D	F	V	F	V	D	D	V	D	A	V	L	K	A	S	R
Template Known Secondary structure											S	S								T	T	S								.	.	.	.								T			S																	T	T				S					S							T	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	.	.	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		N	I	D	T	L	L	M	M	V	G	I	P	E	E	I	I	R	K	A	F	S	T	I	K	Q	G	K	I	Y	E	R	P	K	N	L	K	P	G	I	L	V	V	S	S	A	T	A	K	P	R	G	I	R	P	L	L	F	R	D	L	L	N	F	T	V	G	R	L	V	S	V	A	R	N	I	T	H	V	R	I
Template Known Secondary structure										T	T															T	T							T	T										S	S							S	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	P	L	G	H	V	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.
Template Sequence		S	S	R	S	K	E	K	L	V	E	L	L	E	I	F	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	L	I	F	A	Q	T	E	E	E	G	K	E	L	Y	E	Y	L	K	R	F	K	.	.	.	.	F	N	V	G	E	T	W	S	E	F	E	K	N	F	E	D	F	.
Template Known Secondary structure		S	S															S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S	S														T	T	.	.	.	.						S	S	S										.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.																		.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.			.	.	.	710	.	.	.	.	.	.	.	.	.	720	.				.			.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																.	.	.		.	.
Query SS confidence																																		.	.																.	.	.		.	.
Query Sequence		T	D	G	S	M	R	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D	N	R	.	.	L	N	I	I	E	L	I	Q	G	V	G	R	L	R	D	.	.	.	G	.	.	G	L	C	Y	L	L	S	R	K	N	S	W	A	A	R	N	R	K	G	E	L	P	P	I	K
Query Conservation																																		.	.																.	.	.		.	.
Alig confidence																							.											.	.																.	.	.		.	.
Template Conservation																							.
Template Sequence		K	V	G	K	I	N	I	L	I	G	V	Q	A	Y	Y	V	D	L	P	E	R	.	I	K	Y	V	I	F	W	G	T	P	S	G	P	D	V	Y	T	Y	I	Q	A	S	G	R	S	S	R	I	L	N	G	V	L	V	K	G	V	S	V	I	F	E	E	D	E	E	I	F	E	S	L	K	T	R	L	L	L	I
Template Known Secondary structure			T	T	S		S						T	T						T	T	T	.								S			T	T	T											T	T					T	T
Template Predicted Secondary structure																							.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		748
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		506

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions