Job Description O13559 Confidence 99.75% Date Mon Jul 2 19:10:15 BST 2012 Rank 82 Aligned Residues 222 % Identity 17% Template c3fmpD_ PDB info PDB header:oncoprotein/hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19 Resolution 3.19 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	N	A	E	D	V	V	A	G	E	A	A	S	S	D	H	H	Q	K	I	S	R	V	T	R	K	R	P	R	E	P	K	S	T	N	D	I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.												.	.
Template Conservation																																	.	.	.	.	.	.												.	.
Template Sequence		L	V	D	N	T	N	Q	V	E	V	L	Q	R	D	P	N	S	P	L	Y	S	V	K	S	F	E	E	L	R	L	K	.	.	.	.	.	.	P	Q	L	L	Q	G	V	Y	A	M	G	.	.	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G
Template Known Secondary structure							S							S	S	T	T	S								S	T	T	T	T			.	.	.	.	.	.										T	T	.	.			S													T	S	S	S										S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.												.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.							.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	.	.	.	.	.	.	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V
Template Known Secondary structure		S	S											T	T			T	T	S		S								S	S																T	T	S	T	T							S	T	T					T	T						S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		L	D	W	.	.	.	.	.	.	.	.	.	.	.	.	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	.	P	R	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.		T	T	S					G	G	G														T	S	T	T										T	T	S	.		T	T	S							S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		222	.	.													.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		554	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	L	T	G	L	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	D	P	N	V	I	K	L
Template Known Secondary structure		S	S	S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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