Job Description O13559 Confidence 99.84% Date Mon Jul 2 19:10:15 BST 2012 Rank 57 Aligned Residues 181 % Identity 15% Template c3fe2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp Resolution 2.60 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.						.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		D	I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	.	.	.	.	.	V	S	F	L	F	V	P	Y	T	V
Query Conservation																																																																			.	.	.	.	.
Alig confidence											.		.	.																		.	.																																		.	.	.	.	.
Template Conservation											.		.	.																		.	.
Template Sequence		N	V	M	D	V	I	A	R	Q	.	N	.	.	F	T	E	P	T	A	I	Q	A	Q	G	W	P	V	A	L	S	.	.	G	L	D	M	V	G	V	A	Q	T	G	S	G	K	T	L	S	Y	L	L	P	A	I	V	H	I	N	H	Q	P	F	L	E	R	G	D	G	P	I	C	L	V	L	A	P	T	R	E
Template Known Secondary structure										T	.	T	.	.			S														T	.	.	T									T	T	S																T	S					T	T				S						S	S
Template Predicted Secondary structure											.		.	.																		.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.		.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.									.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		L	L	A	N	C	M	I	R	L	S	R	C	.	.	.	.	.	.	.	.	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Q	Q	V	Q	Q	V	A	A	E	Y	C	R	A	C	R	L	K	S	T	C	I	Y	G	G	A	P	K	G	P	Q	I	R	D	L	E	R	G	V	E	I	C	I	A	T	P	G	R	L	I	D	F	L	E	C	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	R	T	T	Y	L
Template Known Secondary structure																	T	T								T	T	S											S			S															T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.														.	.	240	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	K	I	V	D	Q	I	.	.	R	P	D	R	Q	T	L	M	W	S	A	T	W	P	K	E	V	R	Q	L	A	E	D	F	L	K	D	Y
Template Known Secondary structure				T	T							T	T											T	S	.	.		T	T								S															S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions