Job Description O13559 Confidence 99.97% Date Mon Jul 2 19:10:15 BST 2012 Rank 37 Aligned Residues 323 % Identity 18% Template c2z0mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii Resolution 1.90 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C
Query Conservation
Alig confidence											.		.	.																		.	.																													.	.	.	.	.	.
Template Conservation											.		.	.																		.	.																													.	.	.	.	.	.
Template Sequence		K	I	E	Q	A	I	R	E	M	.	G	.	.	F	K	N	F	T	E	V	Q	S	K	T	I	P	L	M	L	Q	.	.	G	K	N	V	V	V	R	A	K	T	G	S	G	K	T	A	A	Y	A	I	P	I	L	E	L	G	M	K	.	.	.	.	.	.	S	L	V	V	T	P	T	R	E	L	T	R	Q	V
Template Known Secondary structure										T	.	T	.	.			S														T	.	.	T									T	T	S	S													T			.	.	.	.	.	.						S	S
Template Predicted Secondary structure											.		.	.																		.	.																													.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.		.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y
Query Conservation
Alig confidence																													.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence		A	S	H	I	R	D	I	G	R	Y	M	D	T	K	V	A	E	V	Y	G	G	M	P	Y	K	A	Q	.	.	.	.	.	.	I	N	R	V	R	N	A	D	I	V	V	A	T	P	G	R	L	L	D	L	W	S	K	G	V	I	D	L	S	S	F	E	I	V	I	I	D	E	A	D	L	M	F	E	M	G	F
Template Known Secondary structure									T	T	T	S									T	T	S						.	.	.	.	.	.					T	T		S															T	T	S			G	G	G		S						S							T	T
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V
Query Conservation
Alig confidence													.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	D	I	K	I	I	L	A	Q	T	.	.	S	N	R	K	I	T	G	L	F	S	A	T	I	P	E	E	I	R	K	V	V	K	D	F	I	T	N	Y	E	E	I	E	A	C	I	G	L	A	N	V	E	H	K	F	V	H	V	K	D	D	W	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													.	.	T	T		S							S														S		S							S	G	G	G	G	G									S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	G	H	V	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V	T	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.																									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.																									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	V	Q	A	L	R	E	N	K	D	K	G	V	I	V	F	V	R	T	R	N	R	V	A	K	L	V	R	.	.	.	L	F	D	N	A	I	E	L	R	G	D	L	P	Q	S	V	R	N	R	N	I	D	A	F	.	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T				S	S						S										T	.	.	.	T		T	T						T	T	S													.		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.																									.
Template SS confidence
																							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.		720	.	.			.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.				.	.
Query SS confidence																																													.				.	.
Query Sequence		G	S	M	R	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D	N	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	.	R	D	G	.	.	G	L	C	Y	L	L	S	R	K	N	S	W	A	A	R	N
Query Conservation																																													.				.	.
Alig confidence																																													.				.	.
Template Conservation
Template Sequence		G	E	Y	D	M	L	I	T	T	D	V	A	S	R	G	L	D	I	P	L	V	E	K	V	I	N	F	D	A	P	Q	D	L	R	T	Y	I	H	R	I	G	R	T	G	R	M	G	R	K	G	E	A	I	T	F	I	L	N	E	Y	W	L	E	K	E
Template Known Secondary structure		T	S		S										T	T						B	S					S	S			S	S									T	T	B		G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions