Job Description O13559 Confidence 89.03% Date Mon Jul 2 19:10:15 BST 2012 Rank 222 Aligned Residues 113 % Identity 21% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.											.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	.	.	.	.	.	.	.	.	.	.	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																											.	.	.	.	.	.																																														.	.	.	.
Template Sequence		D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	.	.	.	.	.	.	L	L	A	K	A	V	A	N	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	.	.	.	.
Template Known Secondary structure							T	T					S						S	S	T	T	S				.	.	.	.	.	.										T	T								T	T	T	T		S	S	T	T																	T		.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.																																														.	.	.	.
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.							630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T		T	T	T				T	T											T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																					675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P	A	I	L	R
Template Known Secondary structure			S	T	T									S		G	G	G	S						S
Template Predicted Secondary structure
Template SS confidence
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions