Job Description O13559 Confidence 98.10% Date Mon Jul 2 19:10:15 BST 2012 Rank 137 Aligned Residues 114 % Identity 18% Template c2wjyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Resolution 2.50 Å

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		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N
Query Conservation
Alig confidence																	.	.																															.	.
Template Conservation																	.	.																															.	.
Template Sequence		N	H	S	Q	V	Y	A	V	K	T	V	L	Q	R	P	.	.	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	A	R	Q	G	N	G	P	.	.	V	L	V	C	A	P	S	N	I	A	V	D	Q	L	T	E	K	I	H	Q	T	G	L	K	V	V	R	L	C	A	K
Template Known Secondary structure														T	S	S	.	.								T	T	S															T	T		S	S		.	.						S	S													T	T	T									G
Template Predicted Secondary structure																	.	.																															.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.			.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.			.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		454																																																						.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		S	R	E	A	I	D	S	P	V	S	F	L	A	L	H	N	Q	I	R	N	M	D	S	M	P	E	L	Q	K	L	Q	Q	L	K	D	E	T	G	E	L	S	S	A	D	E	K	R	Y	R	A	L	K	R	T	A	E	R	E	L	L	M	N	A	D	V	I	C	C	T	C	V	G	A	G	D	P	.	.	.	.
Template Known Secondary structure		G	G	G	G				T	T	G	G	G	B							T		T	T												T	T	T	S																										S						T	G	G	G	G		T	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	K	M	Q	F	R	S	I	L	I	D	E	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T				S					T	T	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															624	.	.	.	.	.	630	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions