Phyre 2 alignment of O13559 with c2vsxA

Job Description O13559
Confidence 99.98% Date Mon Jul 2 19:10:15 BST 2012

Rank 27 Aligned Residues 327

% Identity 24% Template c2vsxA_

PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex

Resolution 2.8 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence	L	R	G	V	F	G	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	.	.	G	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L	A	P	T	R	E	L	A	L	Q	I	Q	K	V	V	M
Template Known Secondary structure						T	T	T			S														T	.	.	T									T	T	S	S															T	T			S								S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.

	442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F
Query Conservation
Alig confidence															.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	A	F	H	M	D	I	K	V	H	A	C	I	.	.	.	G	L	R	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	F	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	I	K	M	F	I	L	D	E	A	D	E	M	L	S	S	G	F	K	E	Q	I	Y
Template Known Secondary structure			T	S	S	S									.	.	.			S	S		S															T	T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S							T	T
Template Predicted Secondary structure															.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	112	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.														.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V	P	L	G	H	V
Query Conservation
Alig confidence							.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	I	F	T	L	L	.	.	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	.	.		T	T								S															S	S													S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	186	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.		.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	.	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V	T	D	G	S	M	R
Query Conservation																																																.
Alig confidence	.	.	.	.	.	.	.	.																																								.																										.
Template Conservation	.	.	.	.	.	.	.	.																																																																		.
Template Sequence	.	.	.	.	.	.	.	.	E	E	E	E	Y	K	Y	E	C	L	T	D	L	Y	D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	.	R	S	G	S	S	R
Template Known Secondary structure	.	.	.	.	.	.	.	.		S	G	G	G												S			S							S	S														T	T								T	T	S													.	T	T	T	S		S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.																																																																		.
Template SS confidence
									242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.

	681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D	N	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	R	D	G	G	L	C	Y	L	L	S	R	K	N	S	W	A	A	R	N	R	K	G	E
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	Y	D	L	P	A	N	K	E	N	Y	I	H	R	I	G	R	K	G	V	.	.	.	A	I	N	F	V	T	N	E	D	V	G	A	M	R	E	L	E	K
Template Known Secondary structure						S	G	G	G	S	S					S							S	S			S	S	G	G	G	G										.	.	.							S	S	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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