Job Description O13559 Confidence 100.00% Date Mon Jul 2 19:10:15 BST 2012 Rank 10 Aligned Residues 327 % Identity 16% Template c2va8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Resolution 2.30 Å

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		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence															.																																					.	.																										.	.	.
Template Conservation															.																																					.	.
Template Sequence		G	I	K	K	L	N	P	P	Q	T	E	A	V	.	K	K	G	L	L	E	G	N	R	L	L	L	T	S	P	T	G	S	G	K	T	L	I	A	E	M	G	I	I	S	F	L	L	K	N	G	.	.	G	K	A	I	Y	V	T	P	L	R	A	L	T	N	E	K	Y	L	T	F	K	D	W	E	L	I	G	F
Template Known Secondary structure		S			B										.		T	T	T	T	T	T									T	T	S																	S		.	.	S							S													G	G	G	G	G	G	T
Template Predicted Secondary structure															.																																					.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
			446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I
Query Conservation		.
Alig confidence		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	A	M	T	S	G	D	Y	D	T	D	D	A	W	L	K	N	Y	D	I	I	I	T	T	Y	E	K	L	D	S	L	W	R	H	R	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	N	E	V	N	Y	F	V	L	D	E	L	H	Y	L	N	D	P	E	R	G	P	V	V	E	S	V	T
Template Known Secondary structure								S		S	S	S			G	G	G	G	G		S																		G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G								S	G	G	G	G	G		T	T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.														.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V	P	L	G	H	V	H	K	I
Query Conservation
Alig confidence					.	.	.																																																																					.	.	.	.	.	.
Template Conservation					.	.	.																																																																					.	.	.	.	.	.
Template Sequence		I	R	A	.	.	.	K	R	R	N	L	L	A	L	S	A	T	I	S	N	Y	K	Q	I	A	K	W	L	G	A	E	P	V	A	T	N	W	R	P	V	P	L	I	E	G	V	I	Y	P	E	R	K	K	K	E	Y	N	V	I	F	K	D	N	T	T	K	K	V	H	G	D	D	A	I	.	.	.	.	.	.
Template Known Secondary structure					.	.	.		T	S							S			T	T									T										S	S											S	S	T	T							T	T	S							S	S	S			.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																																					.	.	.	.	.	.
Template SS confidence
		164	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	Y	T	L	D	S	L	S	K	N	G	Q	V	L	V	F	R	N	S	R	K	M	A	E	S	T	A	L	K	I	A	N	Y	M	N	F	V	S	L	D	E	N	A	L	S	E	I	L	K	Q	L	D	D	I	E	E	G	G	S	D	E	K	E	L	L	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T								S	S														T	T	T	S	S																T			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
					651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.		.
Predicted Secondary structure		.	.	.																																																																								.		.	.	.	.
Query SS confidence		.	.	.																																																																								.		.	.	.	.
Query Sequence		.	.	.	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V	T	D	G	S	M	R	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D	N	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	R	D	.	G	.	.	.	.
Query Conservation		.	.	.																																																																								.		.	.	.	.
Alig confidence		.	.	.																								.																												.	.	.																		.		.	.	.	.
Template Conservation																												.																												.	.	.
Template Sequence		S	L	I	S	K	G	V	A	Y	H	H	A	G	L	S	K	A	L	R	D	L	I	E	E	G	F	.	R	Q	R	K	I	K	V	I	V	A	T	P	T	L	A	A	G	V	N	L	P	A	R	T	V	I	I	.	.	.	G	D	I	P	I	M	E	Y	K	Q	M	S	G	R	A	G	R	P	G	F	D	Q	I
Template Known Secondary structure					T	T	T						T	T	S													.		T	T		S							G	G	G	G	G	S	S				B	S					.	.	.													T	T	B			T	T	T		S
Template Predicted Secondary structure																												.																												.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	C	Y	L	L	S	R	K	N	S	W	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	S	I	V	V	V	R	D	K	E	D	V	D	R
Template Known Secondary structure									S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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