Phyre 2 alignment of O13559 with c2qeqA

Job Description O13559
Confidence 99.96% Date Mon Jul 2 19:10:15 BST 2012

Rank 41 Aligned Residues 270

% Identity 17% Template c2qeqA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase

Resolution 3.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G
Query Conservation
Alig confidence																																	.	.																															.	.	.	.	.	.	.	.
Template Conservation																																	.	.																															.	.	.	.	.	.	.	.
Template Sequence	K	Q	I	T	V	L	D	L	H	P	G	A	G	K	T	R	R	I	L	P	Q	I	I	K	E	A	I	N	R	R	L	R	.	.	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	G	L	P	I	R	Y	Q	T	S	A	N	.	.	.	.	.	.	.	.	G	N	E	I	V	D	V	M
Template Known Secondary structure										S	S	T	T	T	T	T	T												T	T			.	.						S	S												T	T	S										.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.

	469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Sequence	C	H	A	T	L	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	S	P	H	R	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	.	.	A	R	G	Y	I	S	T	R	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	S	D	P
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S						S					S	S	T	T									.	.											T	T	S								S	S		T	T				S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template SS confidence
	262	.	.	.	.	.	.	.															270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V	P	L	G	H	V	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	P	E	S	N	A	P	I	S	D	L	Q	T	E	I	P	D	R	A	W	N	S	G	Y	E	W	I	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I
Template Known Secondary structure	S				S	S											S	S			S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.																																																		.	.

	629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.		.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.				.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure																					.																	.	.	.
Query SS confidence																					.																	.	.	.
Query Sequence	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	.	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	.	.	.	E	K	V	S	R	T	K	E	F	V	T	D	G	S	M	R	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D
Query Conservation																					.																	.	.	.
Alig confidence																					.																	.	.	.
Template Conservation
Template Sequence	G	K	T	V	W	F	V	P	S	V	K	M	G	N	E	I	A	L	C	L	Q	R	A	G	K	K	V	I	Q	L	N	R	N	D	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	K	A	S	R	V	I	D	S	R	K	S	V	K	P	T	I	I	T	E	G	E	G	R	V	I	L	G	E	P
Template Known Secondary structure	S							S															T	T													S					S		T	T	S	S		S	S				S															S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

	705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.				.	.	.	.	.	.	.	.	730	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence	N	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	R	D	.	.	.	G	G	L	C	Y	L	L	S	R	K	N	S
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence	S	A	V	T	A	A	S	A	A	Q	R	R	G	R	T	G	R	N	P	S	Q	A	G	D	E	Y	C	Y	G	G	H	T
Template Known Secondary structure													T	T	S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
	448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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