Job Description O13559 Confidence 96.40% Date Mon Jul 2 19:10:15 BST 2012 Rank 163 Aligned Residues 145 % Identity 12% Template c2px0D_ PDB info PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+) Resolution 3.00 Å

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		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	.	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L
Query Conservation																																											.
Alig confidence																																	.										.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	S	K	Y	I	V	L	F	G	S	T	G	A	G	K	T	T	T	L	A	K	L	A	A	I	S	M	L	E	K	.	H	K	K	I	A	F	I	T	T	D	T	Y	R	I	A	A	V	E	Q	L	K	T	Y	A	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	P	L	E
Template Known Secondary structure		S		S	S	B							S	S	S																T	S	.												S	S	T	T	T	T					T					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230																	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		V	C	Y	T	K	E	E	F	Q	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	L	F	S	E	Y	D	H	V	F	V	D	T	A	G	R	N	F	K	D	P	Q	Y	I	D	E	L	K	E	T	I	P	F	E	S	S	.	I	Q	S	F	L	V	L	S	A	T	A	K	Y	E
Template Known Secondary structure				S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T	S	S												S	S	G	G	G	T							S				T	T	.	B								T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.																		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	K	H	I	V	K	R	F	S	S	V	P	V	N	Q	Y	I	F	T	K
Template Known Secondary structure				T	T	T	T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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