Job Description O13559 Confidence 99.82% Date Mon Jul 2 19:10:15 BST 2012 Rank 59 Aligned Residues 191 % Identity 15% Template c2kbeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of amino-terminal domain of dbp5p Resolution UNK

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C
Query Conservation
Alig confidence											.		.	.
Template Conservation											.		.	.
Template Sequence		E	L	L	K	G	I	Y	A	M	.	K	.	.	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q	A	I	C	L	A	P	S	R	E	L	A	R	Q	T
Template Known Secondary structure										S	.	S	.	.	S	S				S									S	S			S	S							S	S	T	T																		T	T										S	S
Template Predicted Secondary structure											.		.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110		.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		437	.	.	440	.	.	.					.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		M	I	R	L	S	R	C	.	.	.	.	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	N	A	Q	V	I	V	G	T	P	G	T	V	L	D	L	M	R	R	K	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M	L
Template Known Secondary structure									S	T	T		S							S	T	T		S			S	S					S						T	T	T							T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.														.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		D	Q	Q	G	L	G	D	Q	C	I	R	V	K	R	F	L	.	P	K	D	T	Q	L	V	L	F	S	A	T	F	A	D	A	V	R	Q	Y	A	K	K	I	V	P	N	A	N	T	L	E	L	Q	T
Template Known Secondary structure			S	T	T												T	.	T	T	T	S							S														S	T	T	S
Template Predicted Secondary structure																		.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions